Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OEG85_RS07610 Genome accession   NZ_CP107241
Coordinates   1832932..1833456 (+) Length   174 a.a.
NCBI ID   WP_249045239.1    Uniprot ID   -
Organism   Xanthomonas hortorum strain Oregano 108     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1827932..1838456
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OEG85_RS07590 (OEG85_07590) - 1828259..1828717 (+) 459 WP_268214553.1 hypothetical protein -
  OEG85_RS07595 (OEG85_07595) murL 1828714..1830069 (+) 1356 WP_268214554.1 UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-L- glutamate epimerase -
  OEG85_RS07600 (OEG85_07600) murD 1830050..1831459 (+) 1410 WP_268214555.1 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase -
  OEG85_RS07605 (OEG85_07605) - 1831662..1832660 (-) 999 WP_268214556.1 polyprenyl synthetase family protein -
  OEG85_RS07610 (OEG85_07610) ssb 1832932..1833456 (+) 525 WP_249045239.1 single-stranded DNA-binding protein Machinery gene
  OEG85_RS07615 (OEG85_07615) - 1833766..1835964 (+) 2199 WP_268214557.1 TonB-dependent receptor -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18787.69 Da        Isoelectric Point: 5.3177

>NTDB_id=738728 OEG85_RS07610 WP_249045239.1 1832932..1833456(+) (ssb) [Xanthomonas hortorum strain Oregano 108]
MARGINKVILVGNLGNDPDTKYTQAGMAITRVSLATTSMRKDREGNNQERTEWHRVVFFGKLGEIAGEYLRKGSQVYVEG
ELRYDKYTGQDGVEKYSTDIVANEMQMLGGRGEGGGGGMGGDRPQRAQAPRQQQGGGGGGGQGGGQDYAPRRQQPAQQQS
APPMDDFADDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=738728 OEG85_RS07610 WP_249045239.1 1832932..1833456(+) (ssb) [Xanthomonas hortorum strain Oregano 108]
ATGGCCCGCGGCATCAACAAAGTCATCCTCGTCGGCAACCTCGGCAACGATCCCGACACCAAGTACACCCAGGCCGGCAT
GGCGATCACCCGCGTGAGTCTGGCCACCACCAGCATGCGCAAGGACCGCGAGGGCAACAATCAGGAGCGCACCGAGTGGC
ACCGCGTGGTGTTCTTCGGCAAGCTGGGCGAAATCGCCGGTGAGTACCTGCGCAAGGGCTCGCAGGTGTACGTCGAAGGC
GAGTTGCGCTACGACAAGTACACCGGCCAGGACGGCGTGGAAAAGTACAGCACCGACATCGTCGCCAACGAGATGCAGAT
GCTCGGCGGCCGTGGTGAAGGCGGTGGCGGCGGCATGGGTGGCGATCGCCCGCAGCGCGCGCAGGCGCCGCGCCAGCAGC
AGGGTGGTGGCGGTGGTGGCGGTCAGGGCGGCGGTCAGGATTATGCCCCGCGTCGTCAGCAGCCGGCCCAGCAGCAGTCC
GCGCCGCCAATGGACGACTTTGCGGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

46.237

100

0.494
  ssb Glaesserella parasuis strain SC1401

46.111

100

0.477
  ssb Neisseria meningitidis MC58

46.067

100

0.471
  ssb Neisseria gonorrhoeae MS11

46.067

100

0.471