Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   OEG85_RS05275 Genome accession   NZ_CP107241
Coordinates   1267287..1268345 (+) Length   352 a.a.
NCBI ID   WP_043888921.1    Uniprot ID   A0A6V7CFQ6
Organism   Xanthomonas hortorum strain Oregano 108     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1262287..1273345
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OEG85_RS05260 (OEG85_05260) - 1262381..1263676 (+) 1296 WP_268214282.1 citrate synthase -
  OEG85_RS05265 (OEG85_05265) - 1263780..1264430 (-) 651 WP_268214283.1 hypothetical protein -
  OEG85_RS05270 (OEG85_05270) - 1264645..1267071 (-) 2427 WP_268214284.1 penicillin-binding protein 1A -
  OEG85_RS05275 (OEG85_05275) comM 1267287..1268345 (+) 1059 WP_043888921.1 pilus assembly protein PilM Machinery gene
  OEG85_RS05280 (OEG85_05280) - 1268345..1269112 (+) 768 WP_180314248.1 PilN domain-containing protein -
  OEG85_RS05285 (OEG85_05285) - 1269109..1269774 (+) 666 WP_006451354.1 type 4a pilus biogenesis protein PilO -
  OEG85_RS05290 (OEG85_05290) - 1269771..1270304 (+) 534 WP_006451353.1 pilus assembly protein PilP -
  OEG85_RS05295 (OEG85_05295) - 1270324..1272222 (+) 1899 WP_205393850.1 type IV pilus secretin PilQ family protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37652.26 Da        Isoelectric Point: 4.3882

>NTDB_id=738719 OEG85_RS05275 WP_043888921.1 1267287..1268345(+) (comM) [Xanthomonas hortorum strain Oregano 108]
MGLLPKSQSPLIGVDISSTAVKLLQLSRSGNRFRVDHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAINRSGSKARNAAAA
VAGSAVITKLIPMPADLDDSDMEAQVELEATNYIPYPIEEVNLDFEVLGPMPNSPDMVQVLLAASRSENVELRQSALELG
GLVAKVMDVEAFAVENAFALVASELPVAADAVVALVDIGATMTTLSVLRSGRSLYSREQVFGGKQLTDEVMRRYGLTYEE
AGLAKRQGGLPESYEVEVLEPFKEATVQQISRLLQFFYAGSEFNRVDCIVLAGGCAALSRLPEMVEEQLGVTTVVANPLA
QMTLGPKVQAHALALDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=738719 OEG85_RS05275 WP_043888921.1 1267287..1268345(+) (comM) [Xanthomonas hortorum strain Oregano 108]
GTGGGGCTTCTACCCAAGAGTCAATCGCCACTGATTGGTGTCGATATCAGTTCCACTGCGGTCAAGCTCTTGCAGCTGTC
GCGTAGCGGGAATCGTTTTCGCGTGGATCATTACGCGGTGGAACCGTTGCCGCCGAACGCGGTCGTGGAAAAGAACATTG
TCGAAGTGGAGGCGGTGGGCGAAGCTATTCGCCGCGCCATCAATCGTTCCGGCAGCAAGGCCAGGAACGCGGCTGCGGCC
GTGGCCGGGTCGGCGGTGATCACCAAGCTGATCCCGATGCCGGCCGATCTGGACGACAGCGATATGGAAGCCCAGGTCGA
ACTCGAGGCCACCAATTACATTCCGTACCCGATCGAGGAAGTGAATCTCGATTTCGAAGTGCTTGGCCCGATGCCCAATA
GCCCGGACATGGTCCAGGTGCTGCTGGCTGCCTCGCGTTCGGAGAATGTGGAACTGCGCCAGTCCGCGCTGGAACTCGGT
GGCCTGGTTGCCAAGGTGATGGACGTGGAGGCCTTTGCGGTCGAAAACGCATTTGCCCTGGTCGCCAGCGAGCTGCCGGT
GGCCGCCGATGCAGTGGTTGCGCTGGTGGACATCGGCGCGACCATGACCACGCTGAGCGTGCTGCGTTCCGGTCGCAGTC
TGTATAGCCGCGAGCAGGTGTTCGGCGGCAAGCAGCTCACCGATGAAGTGATGCGCCGTTACGGCCTGACCTATGAAGAA
GCCGGCCTGGCCAAGCGCCAGGGCGGGTTGCCGGAGAGCTACGAGGTCGAAGTGCTGGAGCCGTTCAAAGAGGCGACGGT
GCAACAGATCAGCCGCCTGTTGCAGTTCTTCTACGCGGGCAGCGAATTCAATCGCGTCGACTGCATCGTGCTGGCCGGCG
GTTGCGCCGCGCTGTCGCGCCTGCCGGAGATGGTGGAAGAGCAGCTCGGCGTGACCACTGTGGTCGCCAACCCGCTTGCA
CAGATGACGCTCGGGCCGAAGGTTCAGGCCCATGCGCTGGCGCTGGATGCGCCTGCATTGATGATTGCCACCGGCCTGGC
CCTGAGGAGCTTTGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6V7CFQ6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

50.852

100

0.509
  pilM Acinetobacter baumannii D1279779

50.568

100

0.506
  comM Acinetobacter baylyi ADP1

50.712

99.716

0.506
  pilM Legionella pneumophila strain ERS1305867

47.009

99.716

0.469