Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QAY87_RS00290 Genome accession   NZ_CP121766
Coordinates   47131..47628 (+) Length   165 a.a.
NCBI ID   WP_003114685.1    Uniprot ID   A0A0H2ZGD4
Organism   Pseudomonas aeruginosa strain 22112     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 42131..52628
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAY87_RS00275 (QAY87_00275) bfr 42139..42603 (+) 465 WP_003093668.1 bacterioferritin -
  QAY87_RS00280 (QAY87_00280) uvrA 42675..45512 (-) 2838 WP_003093663.1 excinuclease ABC subunit UvrA Machinery gene
  QAY87_RS00285 (QAY87_00285) - 45726..47114 (+) 1389 WP_023435679.1 MFS transporter -
  QAY87_RS00290 (QAY87_00290) ssb 47131..47628 (+) 498 WP_003114685.1 single-stranded DNA-binding protein Machinery gene
  QAY87_RS00295 (QAY87_00295) pchA 47717..49147 (-) 1431 WP_023435680.1 isochorismate synthase PchA -
  QAY87_RS00300 (QAY87_00300) pchB 49144..49449 (-) 306 WP_031285628.1 isochorismate lyase PchB -
  QAY87_RS00305 (QAY87_00305) pchC 49449..50204 (-) 756 WP_023435682.1 pyochelin biosynthesis editing thioesterase PchC -
  QAY87_RS00310 (QAY87_00310) pchD 50201..51844 (-) 1644 WP_023435683.1 pyochelin biosynthesis salicyl-AMP ligase PchD -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18557.46 Da        Isoelectric Point: 5.2781

>NTDB_id=738630 QAY87_RS00290 WP_003114685.1 47131..47628(+) (ssb) [Pseudomonas aeruginosa strain 22112]
MARGVNKVILVGNVGGDPETRYMPNGNAVTNITLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIAGEYLRKGSQVYVE
GSLRTRKWQGQDGQDRYTTEIVVDINGNMQLLGGRPSGDDSQRAPREPMQRPQQAPQQQSRPAPQQQPAPQPAQDYDSFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=738630 QAY87_RS00290 WP_003114685.1 47131..47628(+) (ssb) [Pseudomonas aeruginosa strain 22112]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTACATGCCCAACGGCAA
TGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAACAGGAGCGCACCGAAT
GGCACCGCGTGGTGTTCTTCGGCCGCCTGGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAA
GGCAGCCTGCGCACCCGCAAGTGGCAGGGCCAGGACGGTCAGGATCGCTACACTACCGAGATCGTGGTCGACATCAACGG
CAACATGCAGTTGCTCGGCGGCCGCCCCTCCGGCGACGACTCGCAGCGTGCCCCGCGCGAGCCCATGCAGCGCCCGCAGC
AGGCCCCGCAGCAGCAGTCGCGTCCGGCCCCGCAGCAGCAACCGGCGCCGCAGCCGGCCCAGGACTACGACAGCTTCGAC
GACGACATTCCGTTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(5-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZGD4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.636
  ssb Glaesserella parasuis strain SC1401

52.486

100

0.576
  ssb Neisseria gonorrhoeae MS11

48.045

100

0.521
  ssb Neisseria meningitidis MC58

47.486

100

0.515