Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OGM44_RS15240 Genome accession   NZ_CP107143
Coordinates   3158258..3158794 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain S2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3153258..3163794
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OGM44_RS15220 (OGM44_15200) aphA 3153546..3154259 (+) 714 WP_001226933.1 acid phosphatase AphA -
  OGM44_RS15225 (OGM44_15205) yjbQ 3154370..3154786 (+) 417 WP_000270369.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  OGM44_RS15230 (OGM44_15210) yjbR 3154790..3155146 (+) 357 WP_000153726.1 MmcQ/YjbR family DNA-binding protein -
  OGM44_RS15235 (OGM44_15215) uvrA 3155181..3158003 (-) 2823 WP_000357755.1 excinuclease ABC subunit UvrA -
  OGM44_RS15240 (OGM44_15220) ssb 3158258..3158794 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  OGM44_RS15245 (OGM44_15225) yjcB 3158893..3159174 (-) 282 WP_001296643.1 YjcB family protein -
  OGM44_RS15250 (OGM44_15230) pdeC 3159603..3161189 (+) 1587 WP_001296644.1 c-di-GMP phosphodiesterase PdeC -
  OGM44_RS15255 (OGM44_15235) soxS 3161192..3161515 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  OGM44_RS15260 (OGM44_15240) soxR 3161601..3162065 (+) 465 WP_000412431.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=738334 OGM44_RS15240 WP_000168305.1 3158258..3158794(+) (ssb) [Escherichia coli strain S2]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=738334 OGM44_RS15240 WP_000168305.1 3158258..3158794(+) (ssb) [Escherichia coli strain S2]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCCACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTAGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGATCGCTATACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489