Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OGM53_RS01005 Genome accession   NZ_CP107117
Coordinates   219018..219554 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain S13     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 214018..224554
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OGM53_RS00985 (OGM53_00985) aphA 214306..215019 (+) 714 WP_001226933.1 acid phosphatase AphA -
  OGM53_RS00990 (OGM53_00990) yjbQ 215130..215546 (+) 417 WP_000270369.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  OGM53_RS00995 (OGM53_00995) yjbR 215550..215906 (+) 357 WP_000153726.1 MmcQ/YjbR family DNA-binding protein -
  OGM53_RS01000 (OGM53_01000) uvrA 215941..218763 (-) 2823 WP_000357755.1 excinuclease ABC subunit UvrA -
  OGM53_RS01005 (OGM53_01005) ssb 219018..219554 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  OGM53_RS01010 (OGM53_01010) yjcB 219653..219934 (-) 282 WP_001296643.1 YjcB family protein -
  OGM53_RS01015 (OGM53_01015) pdeC 220363..221949 (+) 1587 WP_001296644.1 c-di-GMP phosphodiesterase PdeC -
  OGM53_RS01020 (OGM53_01020) soxS 221952..222275 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  OGM53_RS01025 (OGM53_01025) soxR 222361..222825 (+) 465 WP_000412431.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=738110 OGM53_RS01005 WP_000168305.1 219018..219554(+) (ssb) [Escherichia coli strain S13]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=738110 OGM53_RS01005 WP_000168305.1 219018..219554(+) (ssb) [Escherichia coli strain S13]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCCACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTAGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGATCGCTATACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489