Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CT3_RS20755 Genome accession   NZ_AP019749
Coordinates   4593486..4594049 (+) Length   187 a.a.
NCBI ID   WP_066538180.1    Uniprot ID   -
Organism   Comamonas terrigena NBRC 13299     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4588486..4599049
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CT3_RS20745 (CT3_40900) uvrA 4588736..4591747 (-) 3012 WP_066538175.1 excinuclease ABC subunit UvrA -
  CT3_RS20750 (CT3_40910) - 4592001..4593185 (+) 1185 WP_066538178.1 MFS transporter -
  CT3_RS20755 (CT3_40920) ssb 4593486..4594049 (+) 564 WP_066538180.1 single-stranded DNA-binding protein Machinery gene
  CT3_RS20760 (CT3_40930) - 4594180..4595541 (+) 1362 WP_066538182.1 GGDEF domain-containing protein -
  CT3_RS20765 (CT3_40940) - 4595653..4596342 (+) 690 WP_066538413.1 response regulator transcription factor -
  CT3_RS20770 (CT3_40950) - 4596378..4598291 (+) 1914 WP_227657840.1 ATP-binding protein -

Sequence

Protein


Download         Length: 187 a.a.        Molecular weight: 20184.32 Da        Isoelectric Point: 5.9506

>NTDB_id=73777 CT3_RS20755 WP_066538180.1 4593486..4594049(+) (ssb) [Comamonas terrigena NBRC 13299]
MASVNKVIIVGNLGRDPEMRTFPSGDQVANVTIATTDRWRDKNTGENKESTEWHRVVFNGRLAEIVGQYLRKGSQVYVEG
SIRTRKWTDQSGQERYSTEIRADTMQMLGARQGMGGGQNQGYGDDAGYGDNGGGGYDAAPRRQAAPAAPRQAPAPRMAPP
AAAPAPMAPPPQRAASGFDDMDDDIPF

Nucleotide


Download         Length: 564 bp        

>NTDB_id=73777 CT3_RS20755 WP_066538180.1 4593486..4594049(+) (ssb) [Comamonas terrigena NBRC 13299]
ATGGCATCCGTCAACAAAGTCATCATCGTCGGCAATCTCGGCCGCGATCCCGAAATGCGCACCTTCCCCAGCGGGGACCA
GGTGGCCAACGTGACCATCGCCACCACCGACCGCTGGCGCGACAAGAACACCGGTGAGAACAAGGAATCCACCGAGTGGC
ACCGCGTGGTCTTCAACGGCCGTCTGGCCGAAATCGTCGGCCAGTACCTGCGCAAGGGCTCGCAGGTGTATGTGGAAGGC
TCCATCCGCACCCGCAAGTGGACCGACCAGAGCGGCCAGGAACGCTACAGCACCGAAATCCGCGCCGACACCATGCAGAT
GCTGGGTGCCCGCCAGGGCATGGGCGGCGGTCAGAACCAGGGCTATGGTGACGACGCCGGTTACGGCGACAACGGCGGTG
GCGGCTACGACGCTGCCCCCCGCCGCCAGGCTGCCCCGGCAGCGCCCCGTCAGGCACCGGCTCCGCGCATGGCACCTCCC
GCTGCGGCCCCGGCGCCCATGGCACCACCTCCGCAGCGCGCCGCCTCAGGCTTTGACGACATGGACGACGACATCCCGTT
CTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.02

100

0.535
  ssb Glaesserella parasuis strain SC1401

49.738

100

0.508
  ssb Neisseria gonorrhoeae MS11

44.211

100

0.449
  ssb Neisseria meningitidis MC58

42.188

100

0.433

Multiple sequence alignment