Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   ODS73_RS10675 Genome accession   NZ_CP107038
Coordinates   2038818..2039771 (-) Length   317 a.a.
NCBI ID   WP_221015135.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain BM6001     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2033818..2044771
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ODS73_RS10645 (ODS73_10635) - 2034579..2035202 (-) 624 WP_000932660.1 hypothetical protein -
  ODS73_RS10650 (ODS73_10640) jag 2035253..2036239 (-) 987 WP_000260022.1 RNA-binding cell elongation regulator Jag/EloR -
  ODS73_RS10655 (ODS73_10645) - 2036258..2037082 (-) 825 WP_000727904.1 membrane protein insertase YidC -
  ODS73_RS10660 (ODS73_10650) rnpA 2037057..2037428 (-) 372 WP_000739246.1 ribonuclease P protein component -
  ODS73_RS10665 (ODS73_10655) - 2037445..2037576 (-) 132 WP_000768904.1 hypothetical protein -
  ODS73_RS10670 (ODS73_10660) - 2037577..2038767 (-) 1191 WP_284060558.1 acetate kinase -
  ODS73_RS10675 (ODS73_10665) comYH 2038818..2039771 (-) 954 WP_221015135.1 class I SAM-dependent methyltransferase Machinery gene
  ODS73_RS10680 (ODS73_10670) - 2039832..2040426 (-) 595 Protein_2091 class I SAM-dependent methyltransferase -
  ODS73_RS10685 (ODS73_10675) comGG/cglG 2040563..2040976 (-) 414 WP_284060559.1 competence type IV pilus minor pilin ComGG Machinery gene
  ODS73_RS10690 (ODS73_10680) comGF/cglF 2040954..2041415 (-) 462 WP_000250523.1 competence type IV pilus minor pilin ComGF Machinery gene
  ODS73_RS10695 (ODS73_10685) comGE/cglE 2041378..2041680 (-) 303 WP_000413382.1 competence type IV pilus minor pilin ComGE Machinery gene
  ODS73_RS10700 (ODS73_10690) comGD/cglD 2041643..2042047 (-) 405 WP_000588005.1 competence type IV pilus minor pilin ComGD Machinery gene
  ODS73_RS10705 (ODS73_10695) comGC/cglC 2042040..2042306 (-) 267 WP_000962026.1 competence type IV pilus major pilin ComGC Machinery gene
  ODS73_RS10710 (ODS73_10700) - 2042308..2042565 (-) 258 WP_050266402.1 hypothetical protein -
  ODS73_RS10715 (ODS73_10705) - 2042795..2043751 (-) 957 WP_284060560.1 N-acetylmuramoyl-L-alanine amidase family protein -
  ODS73_RS10720 (ODS73_10710) - 2043755..2044087 (-) 333 WP_284060561.1 phage holin -
  ODS73_RS10725 (ODS73_10715) - 2044091..2044507 (-) 417 WP_000687454.1 phage holin family protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35745.92 Da        Isoelectric Point: 4.2474

>NTDB_id=737582 ODS73_RS10675 WP_221015135.1 2038818..2039771(-) (comYH) [Streptococcus pneumoniae strain BM6001]
MDFEKIEQAYTYLLENVQVIQSDLATNFYDALVEQNSIYLDGETELEQVKDNNQTLKRLALRKEEWLKTYQFLLMKAGQT
EPLQANHQFTPDAIALLLVFIVEELFKEEEITILEMGSGMGILGATFLTSLTKKVDYLGMEVDDLLIDLAASMADVIGLQ
AGFVQGDAVRPQMLKESDVVISDLPVGYYPDDAVASRHQVASSQEHTYAHHLLMEQGLKYLKSDGYAIFLAPSDLLTSPQ
SDLLKEWLKEEASLVAMISLPENLFANAKQSKTIFILQKKNEIAVEPFVYPLASLQDASVLMKFKENFQKWTQGTEI

Nucleotide


Download         Length: 954 bp        

>NTDB_id=737582 ODS73_RS10675 WP_221015135.1 2038818..2039771(-) (comYH) [Streptococcus pneumoniae strain BM6001]
ATGGATTTTGAAAAAATTGAACAAGCTTATACCTATTTACTAGAGAATGTCCAAGTCATCCAAAGTGATTTGGCGACCAA
CTTTTATGACGCCTTGGTGGAGCAAAACAGCATCTATCTGGATGGTGAGACTGAGCTAGAACAGGTCAAAGACAACAATC
AGACCCTTAAGCGTTTAGCACTACGCAAAGAAGAATGGCTCAAGACCTACCAGTTTCTTTTGATGAAGGCTGGGCAAACA
GAACCCTTGCAGGCCAATCACCAGTTTACACCGGATGCTATTGCTTTACTTTTGGTGTTTATTGTGGAAGAGCTGTTTAA
AGAGGAGGAAATTACTATCCTCGAAATGGGTTCTGGGATGGGAATTTTGGGCGCTACTTTCTTGACCTCGCTTACTAAAA
AGGTGGATTATTTGGGAATGGAAGTGGATGATTTGCTGATTGATTTGGCAGCTAGCATGGCAGATGTAATTGGTTTGCAG
GCTGGCTTTGTCCAAGGAGATGCCGTTCGTCCACAAATGCTCAAAGAAAGTGATGTGGTCATCAGCGACTTGCCTGTTGG
CTATTATCCTGATGATGCCGTTGCGTCGCGCCATCAAGTTGCTTCTAGTCAAGAACATACTTACGCCCATCACTTGCTCA
TGGAACAAGGGCTTAAGTACCTCAAGTCAGACGGATACGCTATTTTTCTAGCTCCGAGTGATTTGTTGACCAGTCCTCAA
AGTGATTTGTTAAAAGAATGGCTGAAAGAAGAGGCGAGTCTGGTTGCTATGATTAGTCTGCCTGAAAATCTCTTTGCTAA
TGCCAAACAATCTAAGACTATTTTTATCTTACAGAAGAAAAATGAAATAGCAGTAGAGCCTTTTGTTTATCCACTTGCTA
GCTTGCAAGATGCAAGTGTTTTAATGAAATTTAAAGAAAATTTTCAAAAATGGACTCAAGGTACTGAAATATAA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

54.633

98.738

0.539
  comYH Streptococcus mutans UA159

54.313

98.738

0.536