Detailed information    

insolico Bioinformatically predicted

Overview


Name   comGG/cglG   Type   Machinery gene
Locus tag   ODS73_RS10685 Genome accession   NZ_CP107038
Coordinates   2040563..2040976 (-) Length   137 a.a.
NCBI ID   WP_284060559.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain BM6001     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 2035563..2045976
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ODS73_RS10655 (ODS73_10645) - 2036258..2037082 (-) 825 WP_000727904.1 membrane protein insertase YidC -
  ODS73_RS10660 (ODS73_10650) rnpA 2037057..2037428 (-) 372 WP_000739246.1 ribonuclease P protein component -
  ODS73_RS10665 (ODS73_10655) - 2037445..2037576 (-) 132 WP_000768904.1 hypothetical protein -
  ODS73_RS10670 (ODS73_10660) - 2037577..2038767 (-) 1191 WP_284060558.1 acetate kinase -
  ODS73_RS10675 (ODS73_10665) comYH 2038818..2039771 (-) 954 WP_221015135.1 class I SAM-dependent methyltransferase Machinery gene
  ODS73_RS10680 (ODS73_10670) - 2039832..2040426 (-) 595 Protein_2091 class I SAM-dependent methyltransferase -
  ODS73_RS10685 (ODS73_10675) comGG/cglG 2040563..2040976 (-) 414 WP_284060559.1 competence type IV pilus minor pilin ComGG Machinery gene
  ODS73_RS10690 (ODS73_10680) comGF/cglF 2040954..2041415 (-) 462 WP_000250523.1 competence type IV pilus minor pilin ComGF Machinery gene
  ODS73_RS10695 (ODS73_10685) comGE/cglE 2041378..2041680 (-) 303 WP_000413382.1 competence type IV pilus minor pilin ComGE Machinery gene
  ODS73_RS10700 (ODS73_10690) comGD/cglD 2041643..2042047 (-) 405 WP_000588005.1 competence type IV pilus minor pilin ComGD Machinery gene
  ODS73_RS10705 (ODS73_10695) comGC/cglC 2042040..2042306 (-) 267 WP_000962026.1 competence type IV pilus major pilin ComGC Machinery gene
  ODS73_RS10710 (ODS73_10700) - 2042308..2042565 (-) 258 WP_050266402.1 hypothetical protein -
  ODS73_RS10715 (ODS73_10705) - 2042795..2043751 (-) 957 WP_284060560.1 N-acetylmuramoyl-L-alanine amidase family protein -
  ODS73_RS10720 (ODS73_10710) - 2043755..2044087 (-) 333 WP_284060561.1 phage holin -
  ODS73_RS10725 (ODS73_10715) - 2044091..2044507 (-) 417 WP_000687454.1 phage holin family protein -
  ODS73_RS10730 (ODS73_10720) - 2044517..2044780 (-) 264 WP_050266966.1 hypothetical protein -

Sequence


Protein


Download         Length: 137 a.a.        Molecular weight: 15969.45 Da        Isoelectric Point: 10.2472

>NTDB_id=737583 ODS73_RS10685 WP_284060559.1 2040563..2040976(-) (comGG/cglG) [Streptococcus pneumoniae strain BM6001]
MWKKKKVKAGVLLYAVTIAAIFSLLLQFYLNRQIAHYQDYALNKEKLVAFAMAKRTKDKVEQESGEQVFNLGQVSYQNKK
TGLVTRVRTDKSQYEFLFPSVKIKEEKRDKKEEVATDSSEKVEKKKSEEKPEKKENS

Nucleotide


Download         Length: 414 bp        

>NTDB_id=737583 ODS73_RS10685 WP_284060559.1 2040563..2040976(-) (comGG/cglG) [Streptococcus pneumoniae strain BM6001]
GTGTGGAAAAAGAAGAAAGTTAAGGCAGGTGTTCTCCTCTACGCAGTCACCATAGCAGCCATCTTTAGTCTTTTGTTGCA
ATTTTATTTGAACCGACAAATCGCCCACTATCAAGACTATGCTTTGAATAAAGAAAAATTGGTTGCTTTTGCTATGGCTA
AACGAACCAAAGATAAGGTTGAGCAAGAAAGTGGGGAACAGGTTTTTAATCTAGGTCAGGTAAGCTATCAAAACAAGAAA
ACTGGCTTAGTGACGAGGGTTCGTACGGATAAGAGCCAATATGAGTTTCTGTTTCCTTCAGTCAAAATCAAAGAAGAGAA
AAGAGATAAAAAGGAAGAGGTAGCGACCGATTCAAGCGAAAAAGTGGAGAAGAAAAAATCAGAAGAGAAGCCTGAAAAGA
AAGAGAATTCCTAG

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG/cglG Streptococcus pneumoniae Rx1

98.54

100

0.985

  comGG/cglG Streptococcus pneumoniae D39

98.54

100

0.985

  comGG/cglG Streptococcus pneumoniae R6

98.54

100

0.985

  comGG/cglG Streptococcus pneumoniae TIGR4

98.54

100

0.985

  comGG/cglG Streptococcus mitis SK321

86.861

100

0.869

  comGG/cglG Streptococcus mitis NCTC 12261

88.43

88.321

0.781

  comYG Streptococcus mutans UA140

38.06

97.81

0.372

  comYG Streptococcus mutans UA159

38.06

97.81

0.372