Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OCT51_RS18855 Genome accession   NZ_CP107009
Coordinates   4071408..4072016 (-) Length   202 a.a.
NCBI ID   WP_263581351.1    Uniprot ID   -
Organism   Halomonas sp. LR3S48     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4066408..4077016
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCT51_RS18835 (OCT51_18835) fabA 4067902..4068417 (+) 516 WP_263581347.1 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA -
  OCT51_RS18840 (OCT51_18840) fabB 4068432..4069649 (+) 1218 WP_263581348.1 beta-ketoacyl-ACP synthase I -
  OCT51_RS18845 (OCT51_18845) - 4069725..4070483 (-) 759 WP_263581349.1 lysophospholipid acyltransferase family protein -
  OCT51_RS18850 (OCT51_18850) - 4070480..4071373 (-) 894 WP_263581350.1 sugar nucleotide-binding protein -
  OCT51_RS18855 (OCT51_18855) ssb 4071408..4072016 (-) 609 WP_263581351.1 single-stranded DNA-binding protein Machinery gene
  OCT51_RS18860 (OCT51_18860) - 4072090..4073478 (-) 1389 WP_263581352.1 MFS transporter -
  OCT51_RS18865 (OCT51_18865) uvrA 4073642..4076503 (+) 2862 WP_263581353.1 excinuclease ABC subunit UvrA -
  OCT51_RS18870 (OCT51_18870) rplQ 4076594..4076989 (-) 396 WP_263581354.1 50S ribosomal protein L17 -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 21823.94 Da        Isoelectric Point: 5.2421

>NTDB_id=737344 OCT51_RS18855 WP_263581351.1 4071408..4072016(-) (ssb) [Halomonas sp. LR3S48]
MARGVNKVILIGNLGQDPEVRFMPSGSPVANLRVATTDTWTDKQSGQRQERTEWHSVVLFNRLAEIAQQYLKKGSRVYLE
GRLQTRKWQGQDGQDRYTTEIVCNDMQMLDTRSGDFGGQPGAGMPQQQGGYGAPQGASVPQQGGYGNAAPQPGGFGGQPQ
QRPAPGGQPQQGGQPQQGGQKQSNYGAPDPGSFDDFDDEIPF

Nucleotide


Download         Length: 609 bp        

>NTDB_id=737344 OCT51_RS18855 WP_263581351.1 4071408..4072016(-) (ssb) [Halomonas sp. LR3S48]
ATGGCCCGTGGCGTCAACAAGGTCATTCTCATCGGCAACCTGGGGCAGGATCCCGAGGTTCGCTTCATGCCATCCGGTAG
CCCCGTCGCCAACCTGCGCGTCGCCACTACCGACACCTGGACCGACAAGCAGAGCGGCCAGCGCCAGGAGCGGACCGAGT
GGCACTCGGTGGTGCTATTCAATCGACTGGCCGAGATCGCCCAGCAGTACTTGAAGAAGGGATCGCGGGTCTATCTCGAA
GGGCGCTTGCAGACGCGTAAGTGGCAGGGACAGGACGGTCAGGATCGCTATACCACCGAGATCGTATGCAACGACATGCA
GATGCTCGATACCCGTAGCGGTGACTTCGGCGGCCAGCCGGGGGCGGGCATGCCTCAGCAGCAGGGCGGCTATGGCGCGC
CCCAAGGCGCCTCTGTGCCACAGCAGGGCGGCTACGGCAACGCCGCGCCTCAGCCAGGTGGCTTTGGCGGCCAGCCCCAG
CAGCGACCCGCGCCGGGCGGCCAGCCCCAGCAGGGAGGACAGCCCCAGCAGGGAGGACAGAAGCAGAGCAATTACGGCGC
GCCCGATCCGGGCAGCTTCGACGATTTCGACGACGAAATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

52.913

100

0.54
  ssb Glaesserella parasuis strain SC1401

49.254

99.505

0.49
  ssb Neisseria meningitidis MC58

45.771

99.505

0.455
  ssb Neisseria gonorrhoeae MS11

43.541

100

0.45