Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OCT48_RS01360 Genome accession   NZ_CP107008
Coordinates   274244..274843 (+) Length   199 a.a.
NCBI ID   WP_263590984.1    Uniprot ID   -
Organism   Halomonas sp. M4R1S46     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 269244..279843
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCT48_RS01350 (OCT48_01350) uvrA 269735..272596 (-) 2862 WP_263590982.1 excinuclease ABC subunit UvrA -
  OCT48_RS01355 (OCT48_01355) - 272756..274150 (+) 1395 WP_263590983.1 MFS transporter -
  OCT48_RS01360 (OCT48_01360) ssb 274244..274843 (+) 600 WP_263590984.1 single-stranded DNA-binding protein Machinery gene
  OCT48_RS01365 (OCT48_01365) - 274879..275772 (+) 894 WP_263590985.1 sugar nucleotide-binding protein -
  OCT48_RS01370 (OCT48_01370) - 275769..276527 (+) 759 WP_263590986.1 lysophospholipid acyltransferase family protein -
  OCT48_RS01375 (OCT48_01375) fabB 276606..277820 (-) 1215 WP_263590987.1 beta-ketoacyl-ACP synthase I -
  OCT48_RS01380 (OCT48_01380) fabA 277834..278349 (-) 516 WP_263590988.1 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21391.29 Da        Isoelectric Point: 4.9464

>NTDB_id=737314 OCT48_RS01360 WP_263590984.1 274244..274843(+) (ssb) [Halomonas sp. M4R1S46]
MARGVNKVILIGNLGQDPEVRFTPSGTAVANLNLATTDTWTDRQSGQRQERTEWHRVVMFNKLAEISQQYLRKGSRVYVE
GRLQTRKWQDQNGQDKYSTEIVANDMQMLDSRSGGEMGGGMPQQGGNFAGQPPQGGGFGGQQQAGGFGGQQQGGNYGGGQ
PQRPAPQPAPNQGGGQQQGGNYGAPDPGSFDDFDDEIPF

Nucleotide


Download         Length: 600 bp        

>NTDB_id=737314 OCT48_RS01360 WP_263590984.1 274244..274843(+) (ssb) [Halomonas sp. M4R1S46]
ATGGCCCGTGGCGTCAACAAGGTCATTCTCATCGGCAACCTCGGCCAGGACCCGGAAGTGCGCTTCACGCCGTCCGGCAC
CGCGGTGGCCAACCTCAACCTCGCGACCACCGACACCTGGACCGATCGCCAGAGCGGCCAGCGCCAGGAGCGCACCGAGT
GGCACCGGGTGGTGATGTTCAACAAGCTCGCCGAGATCTCCCAGCAGTACCTGCGCAAGGGCTCGCGGGTCTACGTCGAG
GGTCGCCTGCAGACCCGCAAGTGGCAGGACCAGAACGGCCAGGACAAGTACAGCACCGAGATCGTCGCCAACGACATGCA
GATGCTCGACTCCCGCAGCGGCGGCGAGATGGGCGGCGGCATGCCCCAGCAGGGCGGCAACTTCGCTGGCCAGCCCCCGC
AGGGTGGCGGCTTCGGCGGCCAGCAACAGGCTGGCGGTTTCGGTGGCCAGCAGCAGGGCGGCAACTACGGCGGCGGCCAG
CCCCAGCGCCCGGCTCCCCAGCCGGCGCCCAACCAGGGCGGTGGCCAGCAGCAGGGGGGCAACTATGGGGCGCCGGACCC
GGGCAGCTTCGACGACTTCGACGACGAGATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.485

100

0.523
  ssb Glaesserella parasuis strain SC1401

48.731

98.995

0.482
  ssb Neisseria meningitidis MC58

44.162

98.995

0.437
  ssb Neisseria gonorrhoeae MS11

42.5

100

0.427