Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OCT39_RS00655 Genome accession   NZ_CP107007
Coordinates   142991..143611 (+) Length   206 a.a.
NCBI ID   WP_263585810.1    Uniprot ID   A0AA96E1I9
Organism   Halomonas sp. GD1P12     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 137991..148611
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCT39_RS00645 (OCT39_00645) uvrA 138402..141233 (-) 2832 WP_263585808.1 excinuclease ABC subunit UvrA -
  OCT39_RS00650 (OCT39_00650) - 141465..142847 (+) 1383 WP_263585809.1 MFS transporter -
  OCT39_RS00655 (OCT39_00655) ssb 142991..143611 (+) 621 WP_263585810.1 single-stranded DNA-binding protein Machinery gene
  OCT39_RS00660 (OCT39_00660) - 143667..144566 (+) 900 WP_263585811.1 NAD(P)-dependent oxidoreductase -
  OCT39_RS00665 (OCT39_00665) - 144563..145324 (+) 762 WP_263585812.1 lysophospholipid acyltransferase family protein -
  OCT39_RS00670 (OCT39_00670) fabB 145550..146767 (-) 1218 WP_263585813.1 beta-ketoacyl-ACP synthase I -
  OCT39_RS00675 (OCT39_00675) fabA 146780..147295 (-) 516 WP_252105831.1 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 22446.19 Da        Isoelectric Point: 5.2389

>NTDB_id=737293 OCT39_RS00655 WP_263585810.1 142991..143611(+) (ssb) [Halomonas sp. GD1P12]
MARGINKVILIGNLGQDPEVRFTPSGTAVANLNLATSDTWTDRQSGQRQERTEWHRVVLFNKTAEIAQQYLKKGSKVYVE
GRLQTRKWQDQNGQDRYSTEIVANDMQMLDSRGGDFQGGGAPQQNYQNGAPQGGQSYPGNQPNNQPSHQNAPPQGNQYGG
GQQSAPQQGGQGAPNRGGQSAPNDQNGRFGAPDPGNFDDFDDEIPF

Nucleotide


Download         Length: 621 bp        

>NTDB_id=737293 OCT39_RS00655 WP_263585810.1 142991..143611(+) (ssb) [Halomonas sp. GD1P12]
ATGGCGCGCGGGATTAACAAAGTCATTTTGATCGGTAACCTGGGTCAGGACCCGGAAGTACGTTTCACGCCGTCGGGCAC
GGCGGTAGCGAACCTGAATCTGGCGACCTCGGATACCTGGACCGACCGCCAAAGCGGCCAGCGCCAGGAGCGCACCGAGT
GGCACCGCGTCGTGCTGTTCAACAAGACCGCCGAGATCGCCCAGCAGTACCTGAAAAAAGGCTCCAAGGTCTACGTCGAA
GGACGCCTGCAAACCCGCAAGTGGCAGGACCAGAACGGCCAGGACCGCTACAGCACCGAGATCGTGGCCAACGACATGCA
GATGCTCGATAGCCGCGGCGGCGATTTCCAGGGCGGCGGTGCGCCGCAGCAGAACTATCAGAACGGCGCCCCGCAGGGTG
GCCAGAGCTATCCTGGCAATCAGCCCAACAACCAGCCCAGCCATCAGAACGCGCCGCCCCAGGGCAATCAGTACGGCGGC
GGTCAGCAGAGTGCTCCCCAGCAGGGCGGTCAAGGCGCACCCAATCGCGGCGGCCAAAGCGCGCCGAACGATCAAAACGG
CCGCTTCGGCGCGCCGGACCCGGGTAACTTCGACGATTTCGACGACGAAATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

50.235

100

0.519
  ssb Glaesserella parasuis strain SC1401

48.077

100

0.485
  ssb Neisseria gonorrhoeae MS11

47.525

98.058

0.466
  ssb Neisseria meningitidis MC58

45.545

98.058

0.447