Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OCT50_RS01260 Genome accession   NZ_CP106959
Coordinates   273483..274013 (+) Length   176 a.a.
NCBI ID   WP_032615999.1    Uniprot ID   A0A3E1ZQY9
Organism   Leclercia adecarboxylata strain 17YN198     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 268483..279013
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCT50_RS01240 (OCT50_01240) aphA 268809..269522 (+) 714 WP_032615991.1 acid phosphatase AphA -
  OCT50_RS01245 (OCT50_01245) - 269634..270050 (+) 417 WP_032615993.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  OCT50_RS01250 (OCT50_01250) - 270053..270406 (+) 354 WP_032615995.1 MmcQ/YjbR family DNA-binding protein -
  OCT50_RS01255 (OCT50_01255) uvrA 270407..273232 (-) 2826 WP_032615997.1 excinuclease ABC subunit UvrA -
  OCT50_RS01260 (OCT50_01260) ssb 273483..274013 (+) 531 WP_032615999.1 single-stranded DNA-binding protein SSB1 Machinery gene
  OCT50_RS01265 (OCT50_01265) - 274111..274392 (-) 282 WP_032616001.1 YjcB family protein -
  OCT50_RS01270 (OCT50_01270) - 275003..276331 (+) 1329 WP_223263968.1 sensor domain-containing diguanylate cyclase -
  OCT50_RS01275 (OCT50_01275) - 276670..278256 (+) 1587 WP_032616005.1 EAL domain-containing protein -
  OCT50_RS01280 (OCT50_01280) soxS 278253..278579 (-) 327 WP_032616007.1 superoxide response transcriptional regulator SoxS -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18849.87 Da        Isoelectric Point: 5.2456

>NTDB_id=736829 OCT50_RS01260 WP_032615999.1 273483..274013(+) (ssb) [Leclercia adecarboxylata strain 17YN198]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGAEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQQGGWGQPQQPQGGNQFSGGAQSRPQQQPSAP
AQSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=736829 OCT50_RS01260 WP_032615999.1 273483..274013(+) (ssb) [Leclercia adecarboxylata strain 17YN198]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAGTGG
TGGTGCAGTGGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCCGAAGTGGCCGGTGAATATCTGCGTAAAGGCTCCCAGGTCTATATC
GAAGGCCAGCTGCGTACCCGTAAATGGACCGATCAGTCCGGCGCAGAAAAATACACCACTGAAGTGGTGGTAAACGTCGG
CGGCACCATGCAGATGCTGGGTGGCCGTCAGGGCGGTGGCGCACCAGCAGGTGGCGGCCAGCAGCAGCAGGGCGGTTGGG
GTCAGCCTCAGCAGCCTCAGGGCGGCAACCAGTTCAGCGGCGGCGCACAGTCTCGTCCGCAGCAGCAGCCGTCTGCACCA
GCGCAGTCTAACGAACCGCCAATGGATTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3E1ZQY9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.243

100

0.784
  ssb Glaesserella parasuis strain SC1401

56.684

100

0.602
  ssb Neisseria meningitidis MC58

46.629

100

0.472
  ssb Neisseria gonorrhoeae MS11

46.629

100

0.472