Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   N7L95_RS14630 Genome accession   NZ_CP106951
Coordinates   3309593..3310117 (-) Length   174 a.a.
NCBI ID   WP_301255982.1    Uniprot ID   -
Organism   Eleftheria terrae strain P9846-PB     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3304593..3315117
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N7L95_RS14620 (N7L95_14640) - 3305630..3307456 (+) 1827 WP_301255980.1 AAA domain-containing protein -
  N7L95_RS14625 (N7L95_14645) - 3307459..3309525 (+) 2067 WP_301255981.1 UvrD-helicase domain-containing protein -
  N7L95_RS14630 (N7L95_14650) ssb 3309593..3310117 (-) 525 WP_301255982.1 single-stranded DNA-binding protein Machinery gene
  N7L95_RS14635 (N7L95_14655) - 3310327..3311547 (-) 1221 WP_301255983.1 MFS transporter -
  N7L95_RS14640 (N7L95_14660) recQ 3311947..3313848 (+) 1902 WP_301255984.1 DNA helicase RecQ -
  N7L95_RS14645 (N7L95_14665) - 3313860..3314786 (-) 927 WP_301255985.1 AraC family transcriptional regulator -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18861.95 Da        Isoelectric Point: 5.3929

>NTDB_id=736795 N7L95_RS14630 WP_301255982.1 3309593..3310117(-) (ssb) [Eleftheria terrae strain P9846-PB]
MASVNKVILIGNCGRDPEVRYTPTGTAICNVSVATSSRRKDRSSGESIEETQWHRVTFYERLAEIAGEYLKKGRPVYIEG
RLKYGKYTDKDGIERNTVDIIAEQMQLLGGREGMGGGDEMGGGGGGGYSRSRDSDDMGGGRPERAAPAPRPAPPRQQAPK
ASTGFDDMDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=736795 N7L95_RS14630 WP_301255982.1 3309593..3310117(-) (ssb) [Eleftheria terrae strain P9846-PB]
ATGGCCTCTGTCAACAAAGTCATCCTGATCGGCAATTGCGGCCGTGACCCTGAAGTCCGCTACACCCCCACCGGCACGGC
CATCTGCAACGTTTCCGTCGCCACCTCCAGCCGTCGCAAGGACCGTTCCTCCGGCGAGAGCATCGAGGAAACGCAATGGC
ACCGCGTCACCTTCTACGAGCGCCTGGCCGAGATCGCCGGTGAATATCTCAAAAAGGGCCGCCCCGTCTACATCGAAGGC
CGCCTGAAATACGGCAAGTACACCGACAAGGACGGCATCGAGCGCAACACCGTCGACATCATTGCCGAGCAGATGCAACT
GCTGGGCGGCCGCGAAGGCATGGGTGGTGGCGACGAGATGGGCGGTGGTGGCGGTGGCGGCTACAGCCGCAGCCGCGACA
GCGACGACATGGGCGGCGGCCGTCCCGAACGCGCCGCACCCGCGCCCCGCCCGGCGCCTCCCCGCCAGCAGGCGCCGAAG
GCGTCGACGGGGTTTGATGACATGGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria gonorrhoeae MS11

50.838

100

0.523
  ssb Neisseria meningitidis MC58

50.568

100

0.511
  ssb Vibrio cholerae strain A1552

45.109

100

0.477
  ssb Glaesserella parasuis strain SC1401

41.758

100

0.437