Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   M9799_RS08700 Genome accession   NZ_CP106881
Coordinates   1941383..1941943 (-) Length   186 a.a.
NCBI ID   WP_231042837.1    Uniprot ID   -
Organism   Comamonas endophytica strain 5MLIR     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1936383..1946943
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M9799_RS08675 (M9799_08675) - 1936743..1937312 (+) 570 WP_231042842.1 NUDIX hydrolase -
  M9799_RS08680 (M9799_08680) mnmA 1937395..1938528 (+) 1134 WP_231042841.1 tRNA 2-thiouridine(34) synthase MnmA -
  M9799_RS08685 (M9799_08685) - 1938618..1938971 (-) 354 WP_231042840.1 DUF1428 domain-containing protein -
  M9799_RS08690 (M9799_08690) - 1939080..1940126 (-) 1047 WP_231042839.1 alpha/beta hydrolase -
  M9799_RS08695 (M9799_08695) - 1940313..1941293 (+) 981 WP_231042838.1 DMT family transporter -
  M9799_RS08700 (M9799_08700) ssb 1941383..1941943 (-) 561 WP_231042837.1 single-stranded DNA-binding protein Machinery gene
  M9799_RS08705 (M9799_08705) - 1942101..1943282 (-) 1182 WP_231042836.1 MFS transporter -
  M9799_RS08710 (M9799_08710) uvrA 1943530..1946544 (+) 3015 WP_231043232.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 19973.00 Da        Isoelectric Point: 5.9554

>NTDB_id=736406 M9799_RS08700 WP_231042837.1 1941383..1941943(-) (ssb) [Comamonas endophytica strain 5MLIR]
MASVNKVIIVGNLGRDPEMRTFPSGDQVANVTIATTDRWRDKNTGENKEATEWHRVVFNGRLAEIVGQYLRKGSQVYVEG
SLRTRKWTDQASGQERYATEIRADTMQMLGSRQGMGGGQQGGGYGDDSGYGDNGGGNGGYEAPRRAAPPAAPRAPAPAQR
MAPPAQAPAPQRAASGFDDMDDDIPF

Nucleotide


Download         Length: 561 bp        

>NTDB_id=736406 M9799_RS08700 WP_231042837.1 1941383..1941943(-) (ssb) [Comamonas endophytica strain 5MLIR]
ATGGCATCCGTCAACAAAGTCATCATCGTCGGCAATCTGGGCCGCGATCCCGAAATGCGCACCTTCCCCAGCGGTGACCA
GGTGGCCAACGTGACCATCGCCACCACCGACCGCTGGCGCGACAAGAACACCGGCGAGAACAAGGAAGCCACCGAATGGC
ACCGCGTGGTGTTCAACGGGCGCTTGGCCGAGATCGTCGGCCAGTACCTGCGCAAGGGCTCGCAGGTCTACGTCGAGGGC
TCGCTGCGCACGCGCAAGTGGACCGACCAGGCCTCGGGCCAGGAACGCTACGCGACGGAAATCCGCGCCGACACCATGCA
GATGCTGGGCAGCCGCCAGGGCATGGGCGGCGGCCAGCAAGGCGGCGGCTACGGCGACGACAGCGGCTATGGCGACAACG
GTGGCGGCAACGGCGGCTACGAAGCCCCGCGCCGCGCGGCGCCCCCAGCCGCTCCCCGCGCGCCCGCACCTGCCCAGCGC
ATGGCTCCTCCGGCACAGGCTCCGGCACCGCAGCGCGCGGCTTCGGGCTTTGACGACATGGATGACGACATCCCGTTCTG
A

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

52.041

100

0.548
  ssb Vibrio cholerae strain A1552

50.254

100

0.532
  ssb Neisseria gonorrhoeae MS11

43.784

99.462

0.435
  ssb Neisseria meningitidis MC58

42.703

99.462

0.425