Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   P8R99_RS04600 Genome accession   NZ_CP121160
Coordinates   911967..912632 (-) Length   221 a.a.
NCBI ID   WP_017647122.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain S5     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 906967..917632
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P8R99_RS04595 raiA 911336..911890 (-) 555 WP_000599096.1 ribosome-associated translation inhibitor RaiA -
  P8R99_RS04600 comFC/cflB 911967..912632 (-) 666 WP_017647122.1 ComF family protein Machinery gene
  P8R99_RS04605 comFA/cflA 912632..913921 (-) 1290 WP_000432963.1 DEAD/DEAH box helicase Machinery gene
  P8R99_RS04610 - 913977..914621 (+) 645 WP_001108150.1 YigZ family protein -
  P8R99_RS04615 cysK 914712..915638 (+) 927 WP_000036946.1 cysteine synthase A -
  P8R99_RS04620 - 915790..916878 (-) 1089 WP_278043362.1 glycerol dehydrogenase -
  P8R99_RS04625 - 916946..917614 (-) 669 WP_000394892.1 fructose-6-phosphate aldolase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25573.78 Da        Isoelectric Point: 9.4466

>NTDB_id=736224 P8R99_RS04600 WP_017647122.1 911967..912632(-) (comFC/cflB) [Streptococcus agalactiae strain S5]
MTCLLCHEIDLSQLTFVEFILLKPKQNVICQTCKGSFEALGREMGCQTCCKQIPQKQCQDCIYWGKKGIEVNHFSLYRYN
EAMKKYFSLFKFQGDYLLKDVFTKEIKAALKRYKGYTIVPVPLSHEGYQNRQFNQVIAFLQSANIPYKNILSKKDGGKQS
ANNKEERLKQVQQFTLKNEAELRDNLLIVDDIYTTGATIAQIRKLLEEKGIKNIKSFSLAR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=736224 P8R99_RS04600 WP_017647122.1 911967..912632(-) (comFC/cflB) [Streptococcus agalactiae strain S5]
ATGACTTGTTTGTTATGTCATGAAATAGATTTGTCGCAATTAACTTTTGTGGAATTTATACTTCTAAAACCAAAGCAAAA
CGTAATTTGTCAAACGTGCAAGGGTAGTTTTGAAGCACTTGGTAGGGAGATGGGTTGCCAAACATGTTGCAAGCAAATCC
CCCAAAAACAATGTCAAGATTGTATTTATTGGGGTAAAAAAGGTATAGAGGTAAATCATTTTTCCCTTTATAGATACAAT
GAAGCAATGAAAAAATATTTTTCTCTTTTTAAATTTCAAGGGGATTATTTGTTGAAAGATGTTTTTACAAAAGAAATAAA
AGCTGCTCTAAAAAGGTATAAGGGCTACACTATAGTGCCAGTTCCCTTGAGTCATGAAGGATACCAAAATAGGCAATTTA
ATCAAGTGATTGCTTTTCTACAATCGGCAAATATACCTTATAAAAATATTCTTTCTAAAAAAGATGGTGGTAAGCAATCG
GCTAATAATAAAGAAGAAAGACTCAAACAAGTTCAGCAATTTACATTAAAAAATGAGGCTGAGTTAAGGGATAACCTTTT
AATTGTTGATGATATTTATACAACAGGCGCAACAATAGCACAAATCAGGAAACTATTAGAAGAAAAAGGTATAAAAAATA
TAAAAAGTTTTTCATTAGCACGCTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae TIGR4

42.534

100

0.425
  comFC/cflB Streptococcus pneumoniae Rx1

42.081

100

0.421
  comFC/cflB Streptococcus pneumoniae D39

42.081

100

0.421
  comFC/cflB Streptococcus pneumoniae R6

42.081

100

0.421
  comFC/cflB Streptococcus mitis SK321

41.176

100

0.412
  comFC/cflB Streptococcus mitis NCTC 12261

41.176

100

0.412