Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   N7Z69_RS01880 Genome accession   NZ_CP106870
Coordinates   374677..375183 (-) Length   168 a.a.
NCBI ID   WP_002967690.1    Uniprot ID   A0A7L9MC56
Organism   Brucella sp. bbatCR03     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 369677..380183
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N7Z69_RS01850 - 370888..371517 (+) 630 WP_006070834.1 MarC family protein -
  N7Z69_RS01860 phnN 372452..373030 (-) 579 Protein_362 phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN -
  N7Z69_RS01865 phnF 373217..373978 (+) 762 WP_105984451.1 phosphonate metabolism transcriptional regulator PhnF -
  N7Z69_RS01870 - 374120..374521 (+) 402 Protein_364 hypothetical protein -
  N7Z69_RS01875 - 374573..374773 (+) 201 WP_002971429.1 hypothetical protein -
  N7Z69_RS01880 ssb 374677..375183 (-) 507 WP_002967690.1 single-stranded DNA-binding protein Machinery gene
  N7Z69_RS01885 - 375751..375951 (+) 201 WP_105984450.1 hypothetical protein -
  N7Z69_RS01890 uvrA 376082..379006 (+) 2925 WP_004685666.1 excinuclease ABC subunit UvrA -
  N7Z69_RS01895 - 379193..379468 (-) 276 WP_002964234.1 HU family DNA-binding protein -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18371.15 Da        Isoelectric Point: 5.3476

>NTDB_id=736196 N7Z69_RS01880 WP_002967690.1 374677..375183(-) (ssb) [Brucella sp. bbatCR03]
MAGSVNKVILVGNLGADPEIRRLNSGDMVANLRIATSESWRDRQTGERKDRTEWHSVVIFNENLAKVAEQYLKKGAKVYI
EGALQTRKWQDQNGNDRYSTEIVLQKFRGELQMLDSRSEGGEGRSFGGGGNRNQMSDYSGGGGDFGSSGPSSGSSGGFSR
DLDDEIPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=736196 N7Z69_RS01880 WP_002967690.1 374677..375183(-) (ssb) [Brucella sp. bbatCR03]
ATGGCTGGTAGCGTCAACAAGGTCATTCTGGTCGGCAATCTTGGTGCAGATCCTGAAATTCGCCGCCTGAATTCCGGCGA
TATGGTTGCCAACCTGCGCATTGCAACCTCGGAAAGCTGGCGTGACCGCCAGACCGGCGAACGCAAGGATCGCACCGAAT
GGCACAGCGTCGTCATCTTCAATGAAAATCTCGCCAAGGTTGCCGAACAATATCTGAAGAAGGGCGCCAAGGTTTATATC
GAAGGCGCGCTCCAGACCCGCAAGTGGCAGGATCAAAACGGCAATGACCGTTATTCAACGGAAATTGTGCTGCAAAAATT
CCGTGGAGAGCTTCAAATGCTCGACAGCCGCAGCGAAGGCGGCGAGGGCCGTTCCTTCGGCGGTGGTGGCAACCGCAACC
AGATGTCGGATTATTCCGGCGGCGGTGGAGATTTCGGCTCATCCGGCCCATCTTCGGGCAGCAGCGGCGGTTTCTCGCGC
GATCTGGACGATGAAATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

48.947

100

0.554
  ssb Vibrio cholerae strain A1552

49.711

100

0.512
  ssb Neisseria meningitidis MC58

38.547

100

0.411
  ssb Neisseria gonorrhoeae MS11

37.778

100

0.405