Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OCJ37_RS06700 Genome accession   NZ_CP106869
Coordinates   1619576..1620094 (+) Length   172 a.a.
NCBI ID   WP_263112895.1    Uniprot ID   -
Organism   Xanthomonas sp. AM6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1614576..1625094
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCJ37_RS06685 (OCJ37_06685) murD 1615785..1617218 (+) 1434 WP_263112892.1 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase -
  OCJ37_RS06690 (OCJ37_06690) - 1617403..1618197 (+) 795 WP_263112893.1 dienelactone hydrolase family protein -
  OCJ37_RS06695 (OCJ37_06695) - 1618385..1619383 (-) 999 WP_263112894.1 polyprenyl synthetase family protein -
  OCJ37_RS06700 (OCJ37_06700) ssb 1619576..1620094 (+) 519 WP_263112895.1 single-stranded DNA-binding protein Machinery gene
  OCJ37_RS06705 (OCJ37_06705) - 1620698..1621594 (+) 897 WP_263112896.1 TIM barrel protein -
  OCJ37_RS06710 (OCJ37_06710) - 1621625..1623310 (+) 1686 WP_263112897.1 GMC family oxidoreductase -
  OCJ37_RS06715 (OCJ37_06715) - 1623310..1623885 (+) 576 WP_263112898.1 gluconate 2-dehydrogenase subunit 3 family protein -
  OCJ37_RS06720 (OCJ37_06720) - 1623930..1624673 (+) 744 WP_263113609.1 DUF1080 domain-containing protein -
  OCJ37_RS06725 (OCJ37_06725) - 1624701..1624997 (-) 297 WP_263112899.1 cytochrome c -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18615.52 Da        Isoelectric Point: 5.3242

>NTDB_id=736186 OCJ37_RS06700 WP_263112895.1 1619576..1620094(+) (ssb) [Xanthomonas sp. AM6]
MARGINKVILVGNLGNDPDTKYTQSGMAITRISLATTSVRKDKDGNQQERTEWHRVVFFGKLGEIAGEYLRKGSSVYVEG
SIRYDKYTGQDGVEKYSTDIVADEMQMLGGRGEGGGGGGAGMGGDRPQRSAPPRQERPNQGGGGQDYAPRRQQPAPQQSA
PMDDFADDDIPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=736186 OCJ37_RS06700 WP_263112895.1 1619576..1620094(+) (ssb) [Xanthomonas sp. AM6]
ATGGCCCGCGGCATCAACAAAGTCATCCTCGTCGGCAACCTCGGCAACGATCCCGACACCAAGTACACCCAGTCCGGCAT
GGCGATCACCCGTATCAGCCTGGCCACCACCAGCGTGCGCAAGGACAAGGACGGCAACCAGCAGGAGCGCACTGAATGGC
ACCGTGTGGTGTTCTTCGGCAAGCTCGGCGAGATCGCCGGCGAGTACCTGCGCAAGGGCAGCTCGGTCTACGTCGAAGGC
TCGATCCGCTACGACAAGTACACCGGCCAGGACGGCGTGGAGAAGTACTCCACCGACATCGTCGCCGACGAGATGCAGAT
GCTGGGCGGCCGCGGCGAAGGCGGTGGCGGCGGTGGTGCCGGCATGGGCGGCGATCGCCCGCAGCGCTCGGCCCCGCCGC
GCCAGGAACGCCCGAACCAGGGCGGCGGCGGCCAGGACTACGCCCCGCGCCGCCAGCAGCCGGCGCCGCAGCAGTCCGCG
CCGATGGACGATTTCGCCGACGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

46.154

100

0.488
  ssb Neisseria gonorrhoeae MS11

48

100

0.488
  ssb Glaesserella parasuis strain SC1401

45.652

100

0.488
  ssb Neisseria meningitidis MC58

45.402

100

0.459