Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   P8R98_RS10495 Genome accession   NZ_CP121159
Coordinates   2129179..2129844 (-) Length   221 a.a.
NCBI ID   WP_000128298.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain S1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2124179..2134844
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P8R98_RS10485 - 2127062..2128561 (+) 1500 WP_278043458.1 IS1182-like element IS1563 family transposase -
  P8R98_RS10490 raiA 2128548..2129102 (-) 555 WP_000599096.1 ribosome-associated translation inhibitor RaiA -
  P8R98_RS10495 comFC/cflB 2129179..2129844 (-) 666 WP_000128298.1 ComF family protein Machinery gene
  P8R98_RS10500 - 2129844..2131133 (-) 1290 Protein_2012 DEAD/DEAH box helicase -
  P8R98_RS10505 - 2131189..2131833 (+) 645 WP_001108149.1 YigZ family protein -
  P8R98_RS10510 cysK 2131924..2132850 (+) 927 WP_000036943.1 cysteine synthase A -
  P8R98_RS10515 - 2133002..2134090 (-) 1089 WP_000862118.1 glycerol dehydrogenase -
  P8R98_RS10520 - 2134158..2134826 (-) 669 WP_000394891.1 fructose-6-phosphate aldolase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25559.81 Da        Isoelectric Point: 9.4414

>NTDB_id=736162 P8R98_RS10495 WP_000128298.1 2129179..2129844(-) (comFC/cflB) [Streptococcus agalactiae strain S1]
MTCLLCHEIDLSQLTFVELMLLKPKQNVICQTCKGSFEALSREMGCQTCCKQIPQKQCQDCIYWGKKGIEVNHFSLYRYN
EAMKKYFSLFKFQGDYLLKDVFTKEIKAALKKYKGYTIVPVPLSHEGYQNRQFNQVIAFLQSANIPYKNILSKKDGGKQS
ANNKEERLKQVQQFTLKNEAELRDNLLIVDDIYTTGATIAQIRKLLEEKGIKNIKSFSLAR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=736162 P8R98_RS10495 WP_000128298.1 2129179..2129844(-) (comFC/cflB) [Streptococcus agalactiae strain S1]
ATGACTTGTTTGTTATGTCATGAAATAGATTTATCGCAATTAACTTTTGTGGAACTTATGCTTCTAAAACCAAAGCAAAA
TGTAATTTGTCAAACGTGCAAGGGTAGTTTTGAAGCACTTAGTAGGGAGATGGGTTGCCAAACATGTTGCAAGCAAATTC
CCCAAAAACAATGTCAAGATTGTATTTATTGGGGTAAAAAAGGTATAGAGGTAAATCATTTTTCCCTTTATAGATACAAT
GAAGCAATGAAAAAATATTTTTCTCTTTTTAAATTTCAAGGGGATTATTTGTTGAAAGATGTTTTTACAAAAGAAATAAA
AGCTGCTCTAAAAAAGTATAAGGGCTACACTATAGTGCCAGTTCCCTTGAGTCATGAAGGATACCAAAATAGGCAATTTA
ATCAAGTGATTGCTTTTCTACAATCGGCAAATATACCTTACAAAAATATTCTTTCTAAAAAAGATGGAGGTAAGCAATCG
GCTAATAATAAAGAAGAAAGACTCAAACAAGTTCAGCAATTTACATTAAAAAATGAGGCTGAGTTAAGGGATAACCTTTT
AATTGTTGATGATATTTATACAACAGGCGCAACAATAGCACAAATCAGGAAACTATTAGAAGAAAAAGGTATAAAAAATA
TAAAAAGTTTTTCATTAGCACGCTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae TIGR4

42.986

100

0.43
  comFC/cflB Streptococcus pneumoniae Rx1

42.534

100

0.425
  comFC/cflB Streptococcus pneumoniae D39

42.534

100

0.425
  comFC/cflB Streptococcus pneumoniae R6

42.534

100

0.425
  comFC/cflB Streptococcus mitis SK321

41.629

100

0.416
  comFC/cflB Streptococcus mitis NCTC 12261

41.629

100

0.416