Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   N8145_RS11445 Genome accession   NZ_CP106834
Coordinates   2375092..2375601 (-) Length   169 a.a.
NCBI ID   WP_001831333.1    Uniprot ID   A0A2G7I1N0
Organism   Staphylococcus epidermidis strain AH6072     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2360323..2377114 2375092..2375601 within 0


Gene organization within MGE regions


Location: 2360323..2377114
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N8145_RS11320 (N8145_11320) - 2360323..2360748 (-) 426 WP_263267081.1 NYN domain-containing protein -
  N8145_RS11325 (N8145_11325) - 2360702..2360995 (-) 294 WP_263266870.1 hypothetical protein -
  N8145_RS11330 (N8145_11330) - 2362484..2362831 (-) 348 WP_002447711.1 metalloregulator ArsR/SmtB family transcription factor -
  N8145_RS11335 (N8145_11335) - 2362850..2363467 (-) 618 WP_002447710.1 CadD family cadmium resistance transporter -
  N8145_RS11340 (N8145_11340) - 2363608..2363796 (-) 189 WP_115314050.1 hypothetical protein -
  N8145_RS11345 (N8145_11345) - 2363929..2364501 (-) 573 WP_115314051.1 terminase small subunit -
  N8145_RS11350 (N8145_11350) - 2364543..2364758 (-) 216 WP_002473135.1 hypothetical protein -
  N8145_RS11355 (N8145_11355) - 2364758..2365345 (-) 588 WP_002473138.1 hypothetical protein -
  N8145_RS11360 (N8145_11360) - 2365424..2365756 (-) 333 WP_002502287.1 hypothetical protein -
  N8145_RS11365 (N8145_11365) - 2366125..2366709 (-) 585 WP_263266876.1 hypothetical protein -
  N8145_RS11370 (N8145_11370) - 2366706..2367350 (-) 645 WP_115314053.1 pathogenicity island protein -
  N8145_RS11375 (N8145_11375) - 2367352..2367633 (-) 282 WP_002502284.1 hypothetical protein -
  N8145_RS11380 (N8145_11380) - 2367635..2367997 (-) 363 WP_075778672.1 pathogenicity island protein -
  N8145_RS11385 (N8145_11385) - 2368291..2369757 (-) 1467 WP_115314054.1 virulence-associated E family protein -
  N8145_RS11390 (N8145_11390) - 2369770..2370642 (-) 873 WP_002468648.1 primase alpha helix C-terminal domain-containing protein -
  N8145_RS11395 (N8145_11395) - 2370736..2371077 (-) 342 WP_002468657.1 hypothetical protein -
  N8145_RS11400 (N8145_11400) - 2371081..2371437 (-) 357 WP_002468640.1 hypothetical protein -
  N8145_RS11405 (N8145_11405) tscA 2371439..2371651 (-) 213 WP_115314055.1 type II toxin-antitoxin system antitoxin TscA -
  N8145_RS11410 (N8145_11410) - 2371656..2371811 (-) 156 WP_165417851.1 hypothetical protein -
  N8145_RS11415 (N8145_11415) - 2371827..2372099 (-) 273 WP_115314056.1 helix-turn-helix domain-containing protein -
  N8145_RS11420 (N8145_11420) - 2372100..2372312 (-) 213 WP_115314057.1 helix-turn-helix transcriptional regulator -
  N8145_RS11425 (N8145_11425) - 2372456..2373151 (+) 696 WP_115314058.1 helix-turn-helix domain-containing protein -
  N8145_RS11430 (N8145_11430) - 2373182..2373415 (+) 234 WP_002468636.1 hypothetical protein -
  N8145_RS11435 (N8145_11435) - 2373439..2374659 (+) 1221 WP_115314059.1 site-specific integrase -
  N8145_RS11440 (N8145_11440) rpsR 2374805..2375047 (-) 243 WP_001831354.1 30S ribosomal protein S18 -
  N8145_RS11445 (N8145_11445) ssbA 2375092..2375601 (-) 510 WP_001831333.1 single-stranded DNA-binding protein Machinery gene
  N8145_RS11450 (N8145_11450) rpsF 2375624..2375920 (-) 297 WP_001831345.1 30S ribosomal protein S6 -
  N8145_RS11455 (N8145_11455) - 2376305..2377114 (+) 810 WP_002470454.1 GH25 family lysozyme -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18680.20 Da        Isoelectric Point: 4.9056

>NTDB_id=736008 N8145_RS11445 WP_001831333.1 2375092..2375601(-) (ssbA) [Staphylococcus epidermidis strain AH6072]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQAENVNNYLSKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNAQHGGQRSQNNNFQDYGQGFGGQQSGQNTSYNNNNSSNSNQSDNPFANANGPI
DISDDDLPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=736008 N8145_RS11445 WP_001831333.1 2375092..2375601(-) (ssbA) [Staphylococcus epidermidis strain AH6072]
ATGTTAAATCGAGTTGTATTAGTAGGTCGTCTAACGAAAGATCCAGAATACAGAACCACACCCTCAGGCGTAAGTGTAGC
GACATTTACTCTAGCAGTTAATCGTACTTTCACGAATGCTCAAGGGGAACGCGAAGCTGACTTTATTAACTGTGTAGTCT
TCCGTAGACAAGCAGAAAATGTAAATAACTACTTGTCTAAAGGTAGTTTAGCTGGCGTTGATGGTCGCATACAATCACGT
AGTTATGAAAATCAAGAAGGTCGTCGTATTTTTGTTACTGAAGTCGTATGTGATAGTGTTCAGTTCCTTGAACCTAAAAA
TGCACAACATGGTGGCCAACGTTCACAGAACAATAATTTCCAAGACTACGGTCAAGGATTTGGTGGTCAGCAATCAGGAC
AAAATACATCTTACAACAACAATAATTCATCAAACTCAAATCAGTCGGATAATCCGTTTGCAAATGCTAATGGACCGATT
GATATCAGTGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2G7I1N0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.607

100

0.68
  ssb Latilactobacillus sakei subsp. sakei 23K

55.172

100

0.568
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.377

62.722

0.379