Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NBH81_RS02735 Genome accession   NZ_CP106828
Coordinates   558759..559346 (-) Length   195 a.a.
NCBI ID   WP_263085319.1    Uniprot ID   -
Organism   Aeromonas veronii strain jsyz553301     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 553759..564346
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NBH81_RS02710 (NBH81_02710) cspA 555065..555277 (-) 213 WP_005316548.1 RNA chaperone/antiterminator CspA -
  NBH81_RS02715 (NBH81_02715) yjbD 555873..556157 (-) 285 WP_005340165.1 DUF3811 domain-containing protein -
  NBH81_RS02720 (NBH81_02720) - 556304..557206 (-) 903 WP_263085318.1 cation diffusion facilitator family transporter -
  NBH81_RS02725 (NBH81_02725) - 557668..557793 (+) 126 WP_019445191.1 hypothetical protein -
  NBH81_RS02730 (NBH81_02730) - 557866..558609 (-) 744 WP_263086326.1 ABC transporter substrate-binding protein -
  NBH81_RS02735 (NBH81_02735) ssb 558759..559346 (-) 588 WP_263085319.1 single-stranded DNA-binding protein Machinery gene
  NBH81_RS02740 (NBH81_02740) uvrA 559717..562545 (+) 2829 WP_263085320.1 excinuclease ABC subunit UvrA -
  NBH81_RS02745 (NBH81_02745) - 562666..564339 (+) 1674 WP_263085321.1 diguanylate cyclase -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21587.10 Da        Isoelectric Point: 5.9301

>NTDB_id=735943 NBH81_RS02735 WP_263085319.1 558759..559346(-) (ssb) [Aeromonas veronii strain jsyz553301]
MASRGINKVILIGNLGQDPEVRYMPSGGAVTNITLATSETWRDKQTGEQKERTEWHRVVFMGKLAEVAGEYLKKGSQVYV
EGKLQTRKWQDQSGQERYTTEVLVDSFTGVMQMLGGRPQGGQGMGQNMGGQSQGSWGQPQQSMPAQQPMNQQRPAPAPQQ
NMQQQGGYGRPAQQPQSAPPVYNEPPMDFDDDIPF

Nucleotide


Download         Length: 588 bp        

>NTDB_id=735943 NBH81_RS02735 WP_263085319.1 558759..559346(-) (ssb) [Aeromonas veronii strain jsyz553301]
ATGGCCAGTCGAGGCATCAATAAAGTCATTCTGATCGGTAACCTCGGGCAAGACCCGGAAGTACGCTACATGCCGAGTGG
CGGTGCTGTGACCAACATTACTCTGGCTACCTCCGAAACCTGGCGCGACAAGCAGACCGGTGAGCAGAAAGAGCGTACCG
AATGGCACCGCGTCGTCTTCATGGGCAAGCTGGCCGAAGTGGCTGGCGAGTACCTGAAGAAGGGCTCCCAGGTCTATGTG
GAAGGCAAACTGCAAACCCGCAAATGGCAAGATCAGAGCGGCCAGGAGCGCTACACCACTGAAGTGCTGGTCGACAGCTT
CACCGGCGTGATGCAGATGCTTGGTGGTCGTCCGCAAGGCGGTCAGGGCATGGGCCAGAACATGGGTGGCCAATCCCAGG
GTAGCTGGGGTCAGCCGCAGCAGAGCATGCCTGCCCAGCAGCCGATGAATCAGCAGCGCCCGGCACCGGCTCCGCAGCAG
AACATGCAGCAGCAAGGCGGTTATGGCCGTCCTGCCCAGCAGCCGCAATCTGCGCCGCCGGTATATAACGAGCCGCCGAT
GGATTTCGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

69.347

100

0.708
  ssb Glaesserella parasuis strain SC1401

53.886

98.974

0.533
  ssb Neisseria gonorrhoeae MS11

46.597

97.949

0.456
  ssb Neisseria meningitidis MC58

45.596

98.974

0.451