Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   P6H84_RS13525 Genome accession   NZ_CP121153
Coordinates   2796502..2797512 (-) Length   336 a.a.
NCBI ID   WP_000568519.1    Uniprot ID   Q32HA1
Organism   Escherichia coli strain E57     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2791502..2802512
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P6H84_RS13505 (P6H84_13505) znuA 2792530..2793462 (-) 933 WP_024179478.1 zinc ABC transporter substrate-binding protein ZnuA -
  P6H84_RS13510 (P6H84_13510) znuC 2793541..2794296 (+) 756 WP_000202996.1 zinc ABC transporter ATP-binding protein ZnuC -
  P6H84_RS13515 (P6H84_13515) znuB 2794293..2795078 (+) 786 WP_000571479.1 zinc ABC transporter permease subunit ZnuB -
  P6H84_RS13520 (P6H84_13520) - 2795255..2796235 (-) 981 WP_000399664.1 IS110-like element IS621 family transposase -
  P6H84_RS13525 (P6H84_13525) ruvB 2796502..2797512 (-) 1011 WP_000568519.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  P6H84_RS13530 (P6H84_13530) ruvA 2797521..2798132 (-) 612 WP_061092987.1 Holliday junction branch migration protein RuvA -
  P6H84_RS13535 (P6H84_13535) yobI 2798271..2798336 (-) 66 WP_072127750.1 stress response small protein YobI -
  P6H84_RS13540 (P6H84_13540) yebB 2798407..2799009 (+) 603 WP_001024929.1 YebB family permuted papain-like enzyme -
  P6H84_RS13545 (P6H84_13545) ruvC 2799011..2799532 (-) 522 WP_001295503.1 crossover junction endodeoxyribonuclease RuvC -
  P6H84_RS13550 (P6H84_13550) yebC 2799567..2800307 (-) 741 WP_000907234.1 YebC/PmpR family DNA-binding transcriptional regulator -
  P6H84_RS13555 (P6H84_13555) nudB 2800336..2800788 (-) 453 WP_077249130.1 dihydroneopterin triphosphate diphosphatase -

Sequence

Protein


Download         Length: 336 a.a.        Molecular weight: 37173.77 Da        Isoelectric Point: 4.7818

>NTDB_id=735879 P6H84_RS13525 WP_000568519.1 2796502..2797512(-) (ruvB) [Escherichia coli strain E57]
MIEADRLISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG
VNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGA
TTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDG
TISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMA
TTRAWNHFGITPPEMP

Nucleotide


Download         Length: 1011 bp        

>NTDB_id=735879 P6H84_RS13525 WP_000568519.1 2796502..2797512(-) (ruvB) [Escherichia coli strain E57]
ATGATTGAAGCAGACCGTCTGATTTCTGCCGGTACCACGTTGCCGGAAGATGTGGCAGATCGCGCCATTCGCCCTAAATT
ACTGGAAGAGTATGTTGGTCAACCGCAGGTTCGTTCACAGATGGAGATTTTCATCAAAGCAGCGAAACTGCGCGGCGATG
CCCTCGATCATCTGTTGATTTTTGGTCCTCCGGGGTTGGGTAAAACTACGCTTGCCAACATTGTCGCCAATGAAATGGGC
GTTAATTTACGCACGACTTCTGGTCCGGTGCTGGAAAAGGCCGGCGATCTGGCAGCGATGCTCACTAATCTTGAACCGCA
TGACGTGCTGTTTATTGATGAGATCCACCGTCTTTCGCCAGTGGTGGAAGAGGTGTTGTATCCGGCAATGGAAGATTACC
AACTGGATATCATGATTGGTGAAGGTCCGGCGGCACGCTCCATTAAAATTGATTTGCCGCCGTTTACCCTGATTGGTGCA
ACCACACGTGCAGGTTCGCTGACATCACCGTTGCGCGATCGTTTTGGTATTGTGCAACGTCTGGAGTTTTATCAGGTGCC
GGATCTGCAATATATCGTCAGTCGCAGCGCACGCTTTATGGGGCTTGAGATGAGTGATGACGGCGCGCTGGAAGTTGCTC
GTCGTGCGCGCGGTACGCCACGTATTGCCAACCGTCTGCTGCGTCGAGTGCGTGACTTCGCCGAAGTGAAGCACGATGGC
ACCATCTCGGCAGATATCGCTGCTCAGGCGCTGGATATGTTGAATGTCGATGCTGAAGGTTTCGATTATATGGACCGCAA
ATTGTTGCTGGCGGTAATCGATAAGTTCTTTGGTGGGCCGGTAGGTCTGGATAACCTGGCGGCAGCCATTGGCGAAGAAC
GTGAAACCATTGAGGATGTACTGGAACCTTATTTGATTCAGCAAGGCTTTTTGCAGCGTACACCGCGTGGGCGTATGGCG
ACGACGCGGGCGTGGAATCACTTTGGCATAACGCCGCCAGAAATGCCGTAA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(23-181)

RuvB AAA lid domain (AAA_lid_4)

(184-257)

RuvB C-terminal winged helix domain (WHD_RuvB)

(259-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HA1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

60.486

97.917

0.592
  ruvB Streptococcus pneumoniae TIGR4

58.934

94.94

0.56
  ruvB Streptococcus pneumoniae R6

58.934

94.94

0.56
  ruvB Streptococcus pneumoniae D39

58.934

94.94

0.56
  ruvB Synechocystis sp. PCC 6803

53.251

96.131

0.512
  ruvB Helicobacter pylori 26695

52.038

94.94

0.494