Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   OCL44_RS09445 Genome accession   NZ_CP106809
Coordinates   1794118..1794615 (+) Length   165 a.a.
NCBI ID   WP_263071574.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10708     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1789118..1799615
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCL44_RS09405 (OCL44_09405) - 1789511..1789894 (+) 384 Protein_1813 pilin -
  OCL44_RS09410 (OCL44_09410) - 1789876..1790220 (+) 345 Protein_1814 pilin -
  OCL44_RS09415 (OCL44_09415) - 1790260..1790628 (+) 369 Protein_1815 pilin -
  OCL44_RS09420 (OCL44_09420) - 1790668..1791036 (+) 369 Protein_1816 pilin -
  OCL44_RS09425 (OCL44_09425) - 1791018..1791365 (+) 348 Protein_1817 pilin -
  OCL44_RS09430 (OCL44_09430) lpxC 1791859..1792782 (+) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  OCL44_RS09435 (OCL44_09435) - 1792910..1793305 (+) 396 Protein_1819 pilin -
  OCL44_RS09440 (OCL44_09440) - 1793423..1793503 (+) 81 Protein_1820 pilin -
  OCL44_RS09445 (OCL44_09445) pilE 1794118..1794615 (+) 498 WP_263071574.1 pilin Machinery gene
  OCL44_RS09450 (OCL44_09450) - 1795152..1795955 (+) 804 WP_263071666.1 opacity family porin -
  OCL44_RS12015 - 1795984..1796277 (-) 294 WP_311201963.1 hypothetical protein -
  OCL44_RS09460 (OCL44_09460) pilA 1796284..1797537 (-) 1254 WP_003687004.1 signal recognition particle-docking protein FtsY Machinery gene
  OCL44_RS09465 (OCL44_09465) msrAB 1797683..1799251 (+) 1569 WP_003696503.1 bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 17854.30 Da        Isoelectric Point: 7.8421

>NTDB_id=735543 OCL44_RS09445 WP_263071574.1 1794118..1794615(+) (pilE) [Neisseria gonorrhoeae strain 10708]
MNTLQKGFTLIELMIVIAIVGILAAVALPAYQDYTARAQVSEAILLAEGQKSAVTEYYLNHGEWPKDNDSAGVASASKII
GKYVQKVEVENGVVTATMASSNVNKEIQGKRLSLWGRRQDGSVKWFCGQPVTRGNAKDDTVADDATAGNNKIDTKHLPST
CREKL

Nucleotide


Download         Length: 498 bp        

>NTDB_id=735543 OCL44_RS09445 WP_263071574.1 1794118..1794615(+) (pilE) [Neisseria gonorrhoeae strain 10708]
ATGAATACCCTTCAAAAAGGCTTTACCCTTATCGAGCTGATGATTGTGATCGCCATCGTCGGCATTTTGGCGGCAGTCGC
CCTTCCCGCCTACCAAGACTACACCGCCCGCGCGCAAGTTTCCGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCG
TTACCGAGTATTACCTGAATCACGGCGAATGGCCCAAAGACAACGACTCTGCCGGCGTGGCATCCGCTTCAAAAATCATA
GGCAAATATGTTCAGAAAGTTGAAGTCGAAAACGGCGTCGTCACCGCCACAATGGCTTCAAGCAACGTAAACAAAGAAAT
CCAAGGCAAAAGACTCTCCCTGTGGGGCAGGCGTCAAGACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTACGCGCG
GCAACGCCAAAGACGACACCGTTGCCGACGACGCCACCGCCGGCAACAACAAAATCGACACCAAGCACCTGCCGTCAACC
TGCCGCGAAAAACTCTGA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(36-162)

Prokaryotic N-terminal methylation motif (N_methyl)

(5-28)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

84.756

99.394

0.842
  pilE Neisseria gonorrhoeae MS11

81.212

100

0.812
  comP Acinetobacter baylyi ADP1

37.278

100

0.382
  pilA/pilA1 Eikenella corrodens VA1

35.795

100

0.382