Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   P7249_RS25180 Genome accession   NZ_CP120944
Coordinates   5035440..5035976 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli O157:H7 str. EDL933     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5030440..5040976
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P7249_RS25160 soxR 5032169..5032633 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  P7249_RS25165 soxS 5032719..5033042 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  P7249_RS25170 pdeC 5033045..5034631 (-) 1587 WP_001016522.1 c-di-GMP phosphodiesterase PdeC -
  P7249_RS25175 yjcB 5035060..5035341 (+) 282 WP_001295689.1 YjcB family protein -
  P7249_RS25180 ssb 5035440..5035976 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  P7249_RS25185 uvrA 5036231..5039053 (+) 2823 WP_000357763.1 excinuclease ABC subunit UvrA Machinery gene
  P7249_RS25190 yjbR 5039088..5039444 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  P7249_RS25195 yjbQ 5039448..5039864 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  P7249_RS25200 aphA 5039975..5040688 (-) 714 WP_001226923.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=735388 P7249_RS25180 WP_000168305.1 5035440..5035976(-) (ssb) [Escherichia coli O157:H7 str. EDL933]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=735388 P7249_RS25180 WP_000168305.1 5035440..5035976(-) (ssb) [Escherichia coli O157:H7 str. EDL933]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489