Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   LLE37_RS02455 Genome accession   NZ_CP106789
Coordinates   454810..455319 (-) Length   169 a.a.
NCBI ID   WP_263057300.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10638     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 449810..460319
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLE37_RS02435 (LLE37_02435) - 449815..450297 (+) 483 WP_003694396.1 CinA family protein -
  LLE37_RS02440 (LLE37_02440) msrAB 450381..451949 (-) 1569 WP_003694393.1 bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB -
  LLE37_RS02445 (LLE37_02445) pilA 452095..453348 (+) 1254 WP_003687004.1 signal recognition particle-docking protein FtsY Machinery gene
  LLE37_RS02450 (LLE37_02450) - 453614..454411 (-) 798 WP_229931638.1 opacity family porin -
  LLE37_RS02455 (LLE37_02455) pilE 454810..455319 (-) 510 WP_263057300.1 pilin Machinery gene
  LLE37_RS02460 (LLE37_02460) - 455696..456148 (-) 453 Protein_465 pilin -
  LLE37_RS02465 (LLE37_02465) pilE 456685..457098 (-) 414 WP_229931637.1 pilin Machinery gene
  LLE37_RS02470 (LLE37_02470) lpxC 457204..458127 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  LLE37_RS02480 (LLE37_02480) - 458619..458975 (-) 357 Protein_468 pilin -
  LLE37_RS02485 (LLE37_02485) pilE 458914..459231 (-) 318 WP_003697861.1 pilin Machinery gene
  LLE37_RS02490 (LLE37_02490) - 459604..459735 (-) 132 WP_010356054.1 hypothetical protein -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18212.80 Da        Isoelectric Point: 8.9546

>NTDB_id=735164 LLE37_RS02455 WP_263057300.1 454810..455319(-) (pilE) [Neisseria gonorrhoeae strain 10638]
MNTLQKGFTLIELMIVIAIVGILAAVALPAYQDYTARAQVSEAILLAEGQKSAVTEYYLNHGEWPKDNASAGVASASDIK
GKYVEKVEVKNGVVTAQMKPSGVNKEIQGKRLSLWARREAGSVKWFCGQPVTRDAGNAGKADDVTKDDAGKKIETKHLPS
TCRDTSMTN

Nucleotide


Download         Length: 510 bp        

>NTDB_id=735164 LLE37_RS02455 WP_263057300.1 454810..455319(-) (pilE) [Neisseria gonorrhoeae strain 10638]
ATGAATACCCTTCAAAAAGGCTTTACCCTTATCGAGCTGATGATTGTGATCGCCATCGTCGGCATTTTGGCGGCAGTCGC
CCTTCCCGCCTACCAAGACTACACCGCCCGCGCGCAAGTTTCCGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCG
TTACCGAGTATTACCTGAATCACGGCGAATGGCCGAAAGACAACGCTTCTGCCGGCGTGGCATCCGCCTCCGACATCAAA
GGCAAATATGTTGAGAAAGTTGAAGTCAAAAACGGCGTCGTTACCGCCCAAATGAAACCAAGCGGCGTAAACAAAGAAAT
CCAAGGCAAAAGACTCTCCCTGTGGGCCAGGCGTGAAGCCGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTACGCGCG
ACGCCGGCAACGCCGGCAAAGCCGACGACGTCACCAAAGACGACGCCGGCAAAAAAATCGAAACCAAGCACCTGCCGTCA
ACCTGCCGCGATACGTCAATGACAAATTAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-28)

Pilin (bacterial filament) (Pilin)

(36-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

81.928

98.225

0.805
  pilE Neisseria gonorrhoeae MS11

81.437

98.817

0.805
  pilA/pilA1 Eikenella corrodens VA1

36.782

100

0.379