Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   LLE37_RS02485 Genome accession   NZ_CP106789
Coordinates   458914..459231 (-) Length   105 a.a.
NCBI ID   WP_003697861.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10638     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 453914..464231
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLE37_RS02455 (LLE37_02455) pilE 454810..455319 (-) 510 WP_263057300.1 pilin Machinery gene
  LLE37_RS02460 (LLE37_02460) - 455696..456148 (-) 453 Protein_465 pilin -
  LLE37_RS02465 (LLE37_02465) pilE 456685..457098 (-) 414 WP_229931637.1 pilin Machinery gene
  LLE37_RS02470 (LLE37_02470) lpxC 457204..458127 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  LLE37_RS02480 (LLE37_02480) - 458619..458975 (-) 357 Protein_468 pilin -
  LLE37_RS02485 (LLE37_02485) pilE 458914..459231 (-) 318 WP_003697861.1 pilin Machinery gene
  LLE37_RS02490 (LLE37_02490) - 459604..459735 (-) 132 WP_010356054.1 hypothetical protein -
  LLE37_RS02495 (LLE37_02495) - 459817..460505 (-) 689 Protein_471 SprT family zinc-dependent metalloprotease -
  LLE37_RS02500 (LLE37_02500) - 460502..461245 (-) 744 WP_003687014.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  LLE37_RS02505 (LLE37_02505) gmhB 461275..461838 (-) 564 WP_003687015.1 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase -
  LLE37_RS02510 (LLE37_02510) - 461981..463633 (+) 1653 WP_003699337.1 LTA synthase family protein -

Sequence

Protein


Download         Length: 105 a.a.        Molecular weight: 11639.16 Da        Isoelectric Point: 10.3830

>NTDB_id=735166 LLE37_RS02485 WP_003697861.1 458914..459231(-) (pilE) [Neisseria gonorrhoeae strain 10638]
MASTGVNKEIKGKKLSLWAKRQDGSVKWFCGQPVKRESNNADAVTADGTDGANGTKIETKHLPSTCRDESSAGCIETPRA
DFKHFQKISRYRILPESRQMAGKQR

Nucleotide


Download         Length: 318 bp        

>NTDB_id=735166 LLE37_RS02485 WP_003697861.1 458914..459231(-) (pilE) [Neisseria gonorrhoeae strain 10638]
ATGGCTTCAACCGGCGTAAACAAAGAAATCAAAGGCAAAAAACTCTCCCTGTGGGCCAAGCGTCAAGACGGTTCGGTAAA
ATGGTTCTGCGGACAGCCGGTTAAGCGCGAAAGCAACAACGCCGACGCCGTCACCGCCGACGGCACCGACGGCGCCAACG
GCACCAAAATCGAAACCAAGCACCTGCCGTCAACCTGCCGCGATGAATCATCTGCCGGTTGCATAGAAACACCACGCGCC
GATTTCAAACACTTCCAAAAAATCAGCCGTTACCGAATATTACCTGAATCACGGCAAATGGCCGGAAAACAACGGTGA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(2-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

73.611

68.571

0.505
  pilE Neisseria gonorrhoeae MS11

60.563

67.619

0.41