Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   N9L84_RS05115 Genome accession   NZ_CP106785
Coordinates   1082470..1083801 (-) Length   443 a.a.
NCBI ID   WP_213628479.1    Uniprot ID   -
Organism   Pseudomonas tohonis strain G5.110     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1077470..1088801
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N9L84_RS05080 (N9L84_05080) - 1077892..1078236 (-) 345 WP_263152746.1 hypothetical protein -
  N9L84_RS05085 (N9L84_05085) - 1078252..1078794 (-) 543 WP_263152748.1 PilX N-terminal domain-containing pilus assembly protein -
  N9L84_RS05090 (N9L84_05090) - 1078804..1079613 (-) 810 WP_263152750.1 PilW family protein -
  N9L84_RS05095 (N9L84_05095) pilV 1079610..1080185 (-) 576 WP_263152751.1 type IV pilus modification protein PilV -
  N9L84_RS05100 (N9L84_05100) - 1080172..1080690 (-) 519 WP_263152752.1 GspH/FimT family pseudopilin -
  N9L84_RS05105 (N9L84_05105) - 1080805..1081431 (-) 627 WP_263152753.1 GspH/FimT family pseudopilin -
  N9L84_RS05110 (N9L84_05110) thiO 1081357..1082457 (+) 1101 WP_263152754.1 glycine oxidase ThiO -
  N9L84_RS05115 (N9L84_05115) pilR 1082470..1083801 (-) 1332 WP_213628479.1 sigma-54 dependent transcriptional regulator Regulator
  N9L84_RS05120 (N9L84_05120) pilS 1083804..1085396 (-) 1593 WP_244862983.1 PAS domain-containing sensor histidine kinase Regulator
  N9L84_RS05125 (N9L84_05125) - 1085386..1085622 (-) 237 WP_236233009.1 PP0621 family protein -
  N9L84_RS05130 (N9L84_05130) - 1085802..1086821 (-) 1020 WP_173173376.1 outer membrane protein assembly factor BamD -
  N9L84_RS05135 (N9L84_05135) rluD 1086970..1087941 (+) 972 WP_397468994.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  N9L84_RS05140 (N9L84_05140) pgeF 1087941..1088666 (+) 726 WP_263152755.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 443 a.a.        Molecular weight: 49411.63 Da        Isoelectric Point: 5.5835

>NTDB_id=735106 N9L84_RS05115 WP_213628479.1 1082470..1083801(-) (pilR) [Pseudomonas tohonis strain G5.110]
MTRQRALIVDDEPDIRELLEITLGRMKLDTRSARNVKEARELLAAEPFDLCLTDMRLPDGTGLDLVQHIQQRHPQVPVAM
ITAYGSLDTAVNALKAGAFDFLTKPVDLGRLRELVAAALRLRTSGSGDTPMDNRLLGDSPPMKALRNQIQKLARSQAPVY
ISGESGSGKELVARMIHEQGPRHEDPFVPVNCGAIPSELMESEFFGHKKGSFTGAIEDKIGLFQAAHGGTLFLDEVADLP
LPMQVKLLRAIQEKAIRTIGGQQEVVVDVRILSATHKDLAAEVAAGRFRQDLYYRLNVIELSVPPLRERREDIPQLADVM
LKRLAADSAAASITRDAMEKLKSYRFPGNVRELENMLERAYTLCDNDQIQPEDLRLADAPSPSESGEADLAQVSNLEDYL
EEIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGID

Nucleotide


Download         Length: 1332 bp        

>NTDB_id=735106 N9L84_RS05115 WP_213628479.1 1082470..1083801(-) (pilR) [Pseudomonas tohonis strain G5.110]
ATGACCAGACAGAGAGCACTCATCGTCGACGACGAGCCCGATATCCGCGAGCTGCTGGAGATCACCCTCGGCCGGATGAA
GCTGGATACCCGCAGCGCCCGCAACGTCAAGGAAGCCCGTGAACTCCTCGCCGCCGAACCCTTCGACCTGTGCCTGACCG
ACATGCGCCTGCCGGATGGCACCGGCCTCGACCTCGTGCAGCACATCCAGCAGCGCCATCCGCAGGTCCCGGTGGCGATG
ATCACCGCCTACGGCAGCCTGGACACCGCCGTCAACGCGCTGAAGGCCGGCGCCTTCGACTTCCTCACCAAGCCGGTGGA
CCTCGGCCGGCTTCGCGAGCTGGTCGCCGCGGCCCTGCGCCTGCGCACCAGCGGCAGCGGCGACACGCCGATGGACAACC
GCCTGCTCGGCGACTCGCCGCCGATGAAGGCGCTGCGCAACCAGATCCAGAAGCTCGCGCGCAGCCAGGCACCCGTCTAC
ATCAGCGGCGAGTCCGGCAGCGGCAAGGAACTGGTGGCCCGCATGATCCACGAGCAGGGCCCGCGCCACGAAGACCCCTT
CGTACCGGTCAACTGCGGCGCCATCCCCTCGGAACTGATGGAAAGCGAATTCTTCGGCCACAAGAAAGGCAGCTTCACCG
GCGCCATCGAAGACAAGATCGGCCTGTTCCAGGCGGCCCATGGCGGCACCCTGTTCCTGGACGAAGTGGCAGACCTGCCC
CTGCCCATGCAGGTGAAACTGCTGCGTGCCATCCAGGAAAAAGCCATTCGCACCATAGGTGGCCAGCAGGAAGTGGTGGT
GGACGTACGCATTCTCAGCGCCACCCACAAGGACCTGGCTGCCGAAGTGGCGGCCGGGCGCTTCCGCCAGGACCTCTATT
ACCGCCTGAACGTCATCGAACTCAGTGTCCCCCCGCTGCGCGAGCGCCGCGAGGACATCCCGCAACTGGCCGATGTGATG
CTCAAGCGCCTGGCTGCGGACAGCGCCGCGGCCAGCATCACCCGCGACGCCATGGAAAAGCTCAAGAGCTATCGCTTCCC
CGGCAACGTCCGCGAGCTGGAAAACATGCTCGAGCGGGCCTACACGCTCTGCGACAACGACCAGATCCAGCCCGAGGACC
TGCGCCTGGCCGACGCGCCCTCGCCGTCGGAAAGCGGCGAGGCCGACCTTGCGCAGGTCAGCAACCTCGAGGACTACCTG
GAAGAGATCGAGCGCAAGCTCATCATGCAGGCCCTGGAAGAAACCCGCTGGAACCGCACCGCCGCAGCCCAGCGCCTAGG
CCTGACCTTCCGCTCGATGCGCTACCGCCTGAAGAAACTGGGGATCGACTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(136-301)

Response regulator receiver domain (Response_reg)

(7-115)

Bacterial regulatory protein, Fis family (HTH_8)

(400-440)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

86.067

100

0.865
  pilR Acinetobacter baumannii strain A118

49.892

100

0.519
  luxO Vibrio cholerae strain A1552

37.557

99.774

0.375