Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   N9L84_RS05120 Genome accession   NZ_CP106785
Coordinates   1083804..1085396 (-) Length   530 a.a.
NCBI ID   WP_244862983.1    Uniprot ID   -
Organism   Pseudomonas tohonis strain G5.110     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1078804..1090396
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N9L84_RS05090 (N9L84_05090) - 1078804..1079613 (-) 810 WP_263152750.1 PilW family protein -
  N9L84_RS05095 (N9L84_05095) pilV 1079610..1080185 (-) 576 WP_263152751.1 type IV pilus modification protein PilV -
  N9L84_RS05100 (N9L84_05100) - 1080172..1080690 (-) 519 WP_263152752.1 GspH/FimT family pseudopilin -
  N9L84_RS05105 (N9L84_05105) - 1080805..1081431 (-) 627 WP_263152753.1 GspH/FimT family pseudopilin -
  N9L84_RS05110 (N9L84_05110) thiO 1081357..1082457 (+) 1101 WP_263152754.1 glycine oxidase ThiO -
  N9L84_RS05115 (N9L84_05115) pilR 1082470..1083801 (-) 1332 WP_213628479.1 sigma-54 dependent transcriptional regulator Regulator
  N9L84_RS05120 (N9L84_05120) pilS 1083804..1085396 (-) 1593 WP_244862983.1 PAS domain-containing sensor histidine kinase Regulator
  N9L84_RS05125 (N9L84_05125) - 1085386..1085622 (-) 237 WP_236233009.1 PP0621 family protein -
  N9L84_RS05130 (N9L84_05130) - 1085802..1086821 (-) 1020 WP_173173376.1 outer membrane protein assembly factor BamD -
  N9L84_RS05135 (N9L84_05135) rluD 1086970..1087941 (+) 972 WP_397468994.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  N9L84_RS05140 (N9L84_05140) pgeF 1087941..1088666 (+) 726 WP_263152755.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 58963.31 Da        Isoelectric Point: 8.9929

>NTDB_id=735107 N9L84_RS05120 WP_244862983.1 1083804..1085396(-) (pilS) [Pseudomonas tohonis strain G5.110]
MSGESTVLGGQPARRIFRLYNLYRLIIGLALVGLISSELDSELLDLARAQLFRNASWFYLLLNILIALMVRHPKHMLQVF
SLALVDVILLSCLFYAAGGTPSGIGNLVIVAVAIANILLRGRVGLLIAAVATIGMIYLTFYLSLSRPEVANQYVQAGALG
ALCFAAALFVQGISKRLQLSETLAEKRAADVANLEALNALILQRMRTGILVLDAQHRVLLANQGAQTLLGRDDLAGRIID
PQSPELVKRLQQWMDNPALRPQSLQAMPEGPVLQPSFVPLQRGEQRDTLIFLEDISQIAQQAQQLKLASLGRLTAGIAHE
IRNPLGAISHAAQLLQESEELTGPDRRLAQIIQDQSRRMNLVIENVLQLSRRRQSEPQLLDLKYWLHRFASEFRNASGPG
QTLHIETNSGTIQTRMDPHQLTQVLTNLVQNGLRYSFQKNKVGQVWLRLFRDPESDLPILEIMDDGAGVPPEQVQHIFEP
FYTTESKGTGLGLYISRELCESNQARLDYRPRETGGSCFRITFAHPRKLS

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=735107 N9L84_RS05120 WP_244862983.1 1083804..1085396(-) (pilS) [Pseudomonas tohonis strain G5.110]
GTGAGCGGTGAGTCGACGGTCCTGGGCGGGCAGCCGGCGCGGCGCATCTTCCGCCTCTACAACCTCTACCGGCTGATCAT
CGGCCTCGCGCTGGTCGGGCTGATCTCCAGCGAGCTGGACAGCGAACTGCTCGACCTCGCCCGCGCGCAGCTGTTCCGCA
ACGCCTCCTGGTTCTACCTGCTGCTGAACATCCTGATCGCCCTGATGGTCCGCCATCCGAAGCACATGCTGCAGGTGTTC
AGCCTGGCACTCGTGGACGTGATCCTGCTGTCCTGCCTGTTCTACGCAGCCGGCGGTACGCCCAGCGGCATCGGCAACCT
GGTGATAGTCGCGGTGGCCATCGCCAACATCCTGCTCCGGGGCCGGGTCGGCCTGCTGATCGCCGCCGTCGCCACCATCG
GCATGATCTACCTGACCTTCTACCTCAGCCTCAGCCGCCCGGAAGTCGCCAACCAGTACGTACAGGCCGGTGCGCTCGGC
GCCCTCTGTTTTGCGGCCGCCCTCTTCGTCCAGGGCATCAGCAAACGCCTGCAACTGAGCGAGACCCTGGCGGAAAAGCG
CGCCGCCGACGTCGCCAACCTCGAGGCACTCAACGCCCTGATCCTGCAACGGATGCGCACCGGCATCCTGGTGCTCGACG
CGCAACACCGCGTGCTCCTGGCCAACCAGGGCGCCCAGACGCTGCTGGGCCGCGATGACCTCGCCGGGCGCATCATCGAC
CCGCAGAGCCCGGAACTGGTCAAGCGCCTCCAGCAATGGATGGACAACCCCGCCCTGCGCCCGCAGAGCCTGCAGGCCAT
GCCCGAAGGCCCGGTGCTGCAACCCAGCTTCGTACCGCTGCAACGGGGCGAACAACGCGACACCCTGATCTTCCTCGAAG
ACATCTCGCAGATCGCCCAGCAGGCGCAACAGCTCAAGCTCGCCTCCCTCGGCCGCCTGACCGCCGGCATCGCCCATGAG
ATACGCAACCCCCTGGGCGCCATCAGCCATGCCGCGCAGCTGCTGCAGGAGTCGGAAGAGCTGACCGGCCCAGACCGACG
CCTGGCGCAGATCATCCAGGACCAGTCGCGACGCATGAACCTGGTGATCGAGAACGTCCTGCAGCTGTCACGCCGTCGCC
AGTCAGAACCCCAGCTGCTCGACCTGAAGTACTGGCTGCACCGCTTCGCCAGCGAGTTCCGCAATGCCTCAGGCCCCGGC
CAGACACTGCACATCGAGACCAACAGCGGCACGATCCAGACCCGCATGGACCCGCACCAGTTGACCCAGGTGCTGACCAA
CCTGGTACAGAACGGTCTGCGCTACAGTTTTCAGAAGAACAAGGTCGGACAGGTCTGGCTTCGCCTATTCCGTGATCCGG
AAAGCGACCTGCCCATCCTGGAGATCATGGATGATGGAGCCGGCGTGCCGCCCGAGCAGGTGCAGCACATCTTCGAACCC
TTCTACACGACTGAAAGCAAGGGTACCGGGCTCGGCCTGTACATCTCGCGCGAGCTGTGCGAGAGCAACCAGGCCCGCCT
CGACTACCGCCCACGCGAAACCGGCGGCAGCTGTTTTCGCATTACCTTTGCCCACCCGCGCAAATTGAGCTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

66.038

100

0.66