Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   P4833_RS04805 Genome accession   NZ_CP120871
Coordinates   1014337..1014834 (+) Length   165 a.a.
NCBI ID   WP_033999905.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PACL     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1009337..1019834
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P4833_RS04790 (P4833_04770) bfr 1009345..1009809 (+) 465 WP_003093668.1 bacterioferritin -
  P4833_RS04795 (P4833_04775) uvrA 1009881..1012718 (-) 2838 WP_003093663.1 excinuclease ABC subunit UvrA Machinery gene
  P4833_RS04800 (P4833_04780) - 1012932..1014320 (+) 1389 WP_003103910.1 MFS transporter -
  P4833_RS04805 (P4833_04785) ssb 1014337..1014834 (+) 498 WP_033999905.1 single-stranded DNA-binding protein Machinery gene
  P4833_RS04810 (P4833_04790) pchA 1014923..1016353 (-) 1431 WP_034020815.1 isochorismate synthase PchA -
  P4833_RS04815 (P4833_04795) pchB 1016350..1016655 (-) 306 WP_003106950.1 isochorismate lyase PchB -
  P4833_RS04820 (P4833_04800) pchC 1016655..1017410 (-) 756 WP_003118944.1 pyochelin biosynthesis editing thioesterase PchC -
  P4833_RS04825 (P4833_04805) pchD 1017407..1019050 (-) 1644 WP_019371421.1 pyochelin biosynthesis salicyl-AMP ligase PchD -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18585.51 Da        Isoelectric Point: 5.2781

>NTDB_id=734865 P4833_RS04805 WP_033999905.1 1014337..1014834(+) (ssb) [Pseudomonas aeruginosa strain PACL]
MARGVNKVILVGNVGGDPETRYMPNGNAVTNITLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIAGEYLRKGSQVYVE
GSLRTRKWQGQDGQDRYTTEIVVDINGNMQLLGGRPSGDDSQRAPREPMQRPQQVPQQQSRPAPQQQPAPQPAQDYDSFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=734865 P4833_RS04805 WP_033999905.1 1014337..1014834(+) (ssb) [Pseudomonas aeruginosa strain PACL]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTTGGTAACGTCGGCGGTGACCCGGAAACCCGCTACATGCCCAACGGCAA
TGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAACAGGAGCGCACCGAAT
GGCACCGCGTGGTGTTCTTCGGCCGCCTGGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAA
GGCAGCCTGCGCACCCGCAAGTGGCAGGGCCAGGACGGTCAGGATCGCTACACCACCGAGATCGTGGTCGACATCAACGG
CAACATGCAGTTGCTCGGCGGCCGCCCCTCCGGCGACGATTCGCAGCGCGCCCCGCGCGAGCCCATGCAGCGCCCGCAGC
AGGTCCCGCAGCAGCAGTCGCGTCCGGCCCCGCAGCAGCAACCGGCGCCGCAACCGGCCCAGGACTACGACAGCTTCGAC
GACGACATTCCGTTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(5-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.636
  ssb Glaesserella parasuis strain SC1401

53.039

100

0.582
  ssb Neisseria meningitidis MC58

47.486

100

0.515
  ssb Neisseria gonorrhoeae MS11

47.486

100

0.515