Detailed information
Bioinformatically predicted
Overview
| Name | ruvA | Type | Machinery gene |
| Locus tag | CPY3401_RS04875 | Genome accession | NZ_AP024599 |
| Coordinates | 1018112..1018663 (-) | Length | 183 a.a. |
| NCBI ID | WP_108304254.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain 3401 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 1013112..1023663
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CPY3401_RS04855 (CPY3401_09850) | ruvC | 1013259..1013732 (-) | 474 | WP_001221182.1 | crossover junction endodeoxyribonuclease RuvC | - |
| CPY3401_RS04860 (CPY3401_09860) | - | 1013864..1014595 (+) | 732 | WP_221062246.1 | NYN domain-containing protein | - |
| CPY3401_RS04870 (CPY3401_09890) | - | 1015126..1018061 (-) | 2936 | Protein_967 | DUF3519 domain-containing protein | - |
| CPY3401_RS04875 (CPY3401_09900) | ruvA | 1018112..1018663 (-) | 552 | WP_108304254.1 | Holliday junction branch migration protein RuvA | Machinery gene |
| CPY3401_RS04880 (CPY3401_09910) | - | 1018688..1020532 (-) | 1845 | WP_221062247.1 | FapA family protein | - |
| CPY3401_RS04885 (CPY3401_09920) | murJ | 1020625..1022085 (+) | 1461 | WP_221062248.1 | murein biosynthesis integral membrane protein MurJ | - |
| CPY3401_RS04890 (CPY3401_09930) | cysS | 1022086..1023483 (+) | 1398 | WP_221062249.1 | cysteine--tRNA ligase | - |
Sequence
Protein
Download Length: 183 a.a. Molecular weight: 20140.67 Da Isoelectric Point: 7.4684
>NTDB_id=73472 CPY3401_RS04875 WP_108304254.1 1018112..1018663(-) (ruvA) [Helicobacter pylori strain 3401]
MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRTSALLQAGQKARLKILQVIKEDAHLLYGFLEESEKILFERLLKINGV
GGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKLADKIMVDLIGFFIQDETSPAHNEVFLALESLGFKSAEINKV
LKTLKPHLSTETAIKEALQQLHS
MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRTSALLQAGQKARLKILQVIKEDAHLLYGFLEESEKILFERLLKINGV
GGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKLADKIMVDLIGFFIQDETSPAHNEVFLALESLGFKSAEINKV
LKTLKPHLSTETAIKEALQQLHS
Nucleotide
Download Length: 552 bp
>NTDB_id=73472 CPY3401_RS04875 WP_108304254.1 1018112..1018663(-) (ruvA) [Helicobacter pylori strain 3401]
ATGATAGTGGGTTTGATAGGGGTTGTGGAAAAAATTTCTGCTTTAGAAGCGCATATAGAAGTGCAAGGGGTTGTTTATGG
GGTGCAAGTTTCTATGCGAACTTCTGCTTTGCTCCAAGCGGGCCAAAAAGCGCGTTTGAAAATCTTGCAAGTGATTAAAG
AAGATGCGCATCTTTTATACGGGTTTTTAGAAGAGAGCGAAAAAATCCTCTTTGAAAGGCTTTTAAAAATCAATGGGGTA
GGGGGGCGTATCGCTTTAGCCATTCTTTCAAGCTTTTCGCCGAATGAATTTGAAAACATTATCGCCACTAAAGAAGTTAA
AAGACTCCAGCAAGTCCCAGGTATTGGGAAAAAGCTCGCTGATAAAATCATGGTGGATTTGATTGGCTTTTTCATTCAAG
ATGAAACTAGCCCTGCGCACAATGAAGTCTTTTTAGCCCTGGAGAGTTTGGGCTTTAAAAGCGCTGAAATCAATAAAGTT
TTAAAAACCCTAAAACCCCATCTCAGCACCGAAACAGCGATTAAAGAAGCCTTACAACAACTGCACTCTTAA
ATGATAGTGGGTTTGATAGGGGTTGTGGAAAAAATTTCTGCTTTAGAAGCGCATATAGAAGTGCAAGGGGTTGTTTATGG
GGTGCAAGTTTCTATGCGAACTTCTGCTTTGCTCCAAGCGGGCCAAAAAGCGCGTTTGAAAATCTTGCAAGTGATTAAAG
AAGATGCGCATCTTTTATACGGGTTTTTAGAAGAGAGCGAAAAAATCCTCTTTGAAAGGCTTTTAAAAATCAATGGGGTA
GGGGGGCGTATCGCTTTAGCCATTCTTTCAAGCTTTTCGCCGAATGAATTTGAAAACATTATCGCCACTAAAGAAGTTAA
AAGACTCCAGCAAGTCCCAGGTATTGGGAAAAAGCTCGCTGATAAAATCATGGTGGATTTGATTGGCTTTTTCATTCAAG
ATGAAACTAGCCCTGCGCACAATGAAGTCTTTTTAGCCCTGGAGAGTTTGGGCTTTAAAAGCGCTGAAATCAATAAAGTT
TTAAAAACCCTAAAACCCCATCTCAGCACCGAAACAGCGATTAAAGAAGCCTTACAACAACTGCACTCTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ruvA | Helicobacter pylori 26695 |
92.896 |
100 |
0.929 |
| ruvA | Bacillus subtilis subsp. subtilis str. 168 |
32.836 |
100 |
0.361 |
| ruvA | Streptococcus pneumoniae TIGR4 |
33.846 |
100 |
0.361 |
| ruvA | Streptococcus pneumoniae R6 |
33.846 |
100 |
0.361 |
| ruvA | Streptococcus pneumoniae D39 |
33.846 |
100 |
0.361 |