Detailed information NTG0734537

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: P4831_RS12485
• Genome accession: NZ_CP120842
• Coordinates: 2406517..2407518 (-)
• Length: 333 a.a.
• NCBI ID: WP_003131994.1
• Uniprot ID: Q9CDL3
• Organism: Lactococcus lactis strain ZFM559
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2401517..2412518

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
P4831_RS12455	-	2401805..2402170 (-)	366	WP_003131985.1	MerR family transcriptional regulator	-
P4831_RS12460	-	2402271..2402708 (-)	438	WP_010906378.1	low molecular weight protein-tyrosine-phosphatase	-
P4831_RS12465	-	2402852..2403016 (-)	165	WP_003131988.1	hypothetical protein	-
P4831_RS12470	-	2403121..2403738 (-)	618	WP_023164702.1	AAA family ATPase	-
P4831_RS12475	-	2403735..2404919 (-)	1185	WP_010906380.1	ABC transporter permease	-
P4831_RS12480	-	2405496..2406380 (-)	885	WP_012898698.1	XRE/MutR family transcriptional regulator	-
P4831_RS12485	ruvB	2406517..2407518 (-)	1002	WP_003131994.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
P4831_RS12490	ruvA	2407644..2408237 (-)	594	WP_003131995.1	Holliday junction branch migration protein RuvA	Machinery gene
P4831_RS12495	hexB	2408350..2410320 (-)	1971	WP_031297070.1	DNA mismatch repair endonuclease MutL	Machinery gene
P4831_RS12500	-	2410449..2411144 (-)	696	WP_010906384.1	hypothetical protein	-

Sequence

Protein

• Length: 333 a.a.
• Molecular weight: 37633.17 Da
• Isoelectric Point: 4.5825

>NTDB_id=734537 P4831_RS12485 WP_003131994.1 2406517..2407518(-) (ruvB) [Lactococcus lactis strain ZFM559]
MNDILNKEPMEEDYGIEKSLRPQFFNQYIGQDKVKEQLEIFIKAAKMREEVLDHVLLFGPPGLGKTTMAFVIANELGVNI
KQTAGPAIEKPGDLVAILNELEPGDVLFIDEIHRMPMQVEEVLYSAMEDFYIDIMLGSGDGSRSVHLDLPPFTLVGATTR
AGMLSNPLRARFGISSHMEYYQERDLEEIVKRTADIFEVEVIDNAALEIALRSRGTPRIANRLLKRVRDFAQIMGDGRVD
KAITDKALSILDVDAAGLDYIDQKILRTMIEMYHGGPVGIGTLAVNIAEDRETVEDMYEPYLIQKGFLMRTKQGRKVTQR
AYEHLGYVYNEED

Nucleotide

• Length: 1002 bp

>NTDB_id=734537 P4831_RS12485 WP_003131994.1 2406517..2407518(-) (ruvB) [Lactococcus lactis strain ZFM559]
ATGAACGATATATTAAACAAAGAGCCAATGGAAGAAGATTACGGTATTGAAAAATCTCTACGTCCGCAATTTTTTAATCA
ATATATTGGTCAAGATAAAGTCAAAGAACAATTAGAAATCTTTATTAAAGCAGCAAAAATGCGTGAAGAAGTTTTGGACC
ACGTGTTACTTTTTGGCCCTCCGGGACTTGGTAAGACAACAATGGCATTTGTCATTGCCAATGAGTTGGGAGTTAATATT
AAACAAACAGCGGGTCCTGCCATTGAAAAGCCAGGAGATTTAGTTGCAATTTTGAATGAATTGGAACCTGGCGATGTACT
ATTTATTGATGAAATTCATCGGATGCCAATGCAAGTTGAAGAAGTTCTTTATAGCGCTATGGAAGATTTCTACATTGATA
TTATGCTTGGTTCTGGTGATGGTTCACGCTCGGTTCATTTAGATTTGCCGCCATTTACTCTAGTTGGGGCAACAACAAGA
GCTGGAATGCTTTCGAATCCATTGCGTGCCCGTTTTGGAATTTCAAGTCATATGGAGTATTATCAAGAGCGTGATTTAGA
AGAAATTGTTAAAAGAACAGCTGATATTTTTGAAGTCGAAGTTATTGATAATGCCGCTTTAGAGATTGCTTTACGTAGTC
GAGGGACTCCACGGATTGCCAATCGTTTACTTAAACGAGTGCGTGATTTTGCTCAAATAATGGGGGATGGCCGAGTGGAT
AAAGCAATTACCGATAAGGCCTTGTCTATTCTTGATGTTGATGCCGCTGGTTTGGACTATATTGACCAAAAAATTCTCCG
CACAATGATTGAAATGTACCACGGTGGTCCTGTTGGGATTGGAACTTTGGCGGTAAATATTGCCGAAGACCGTGAAACGG
TCGAGGATATGTATGAACCTTATTTGATTCAAAAAGGATTTTTGATGAGAACTAAACAGGGACGTAAGGTGACCCAAAGA
GCCTATGAACACCTAGGGTATGTTTACAATGAAGAAGATTGA

Domains

Predicted by InterProScan.

• RuvB C-terminal winged helix domain (WHD_RuvB) (256-325)

• RuvB AAA lid domain (AAA_lid_4) (181-254)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (20-178)

3D structure

• AlphaFold DB: Q9CDL3

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Streptococcus pneumoniae R6	78.614	99.7	0.784
ruvB	Streptococcus pneumoniae D39	78.614	99.7	0.784
ruvB	Streptococcus pneumoniae TIGR4	78.313	99.7	0.781
ruvB	Bacillus subtilis subsp. subtilis str. 168	61.491	96.697	0.595
ruvB	Helicobacter pylori 26695	51.242	96.697	0.495
ruvB	Synechocystis sp. PCC 6803	51.613	93.093	0.48