Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   N8I74_RS14190 Genome accession   NZ_CP106753
Coordinates   3061339..3061839 (-) Length   166 a.a.
NCBI ID   WP_263123757.1    Uniprot ID   -
Organism   Chitiniphilus purpureus strain CD1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3056339..3066839
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N8I74_RS14165 (N8I74_14165) - 3056707..3057627 (-) 921 WP_263123754.1 carbohydrate-binding protein -
  N8I74_RS14170 (N8I74_14170) - 3057714..3060386 (-) 2673 WP_308445860.1 glycosyl hydrolase family 18 protein -
  N8I74_RS14180 (N8I74_14180) - 3060411..3060590 (-) 180 WP_263123755.1 hypothetical protein -
  N8I74_RS14185 (N8I74_14185) - 3060992..3061270 (+) 279 WP_263123756.1 hypothetical protein -
  N8I74_RS14190 (N8I74_14190) ssb 3061339..3061839 (-) 501 WP_263123757.1 single-stranded DNA-binding protein Machinery gene
  N8I74_RS14195 (N8I74_14195) - 3061840..3063219 (-) 1380 WP_263123758.1 MFS transporter -
  N8I74_RS14200 (N8I74_14200) uvrA 3063415..3066261 (+) 2847 WP_263123759.1 excinuclease ABC subunit UvrA -
  N8I74_RS14205 (N8I74_14205) - 3066459..3066818 (+) 360 WP_263123760.1 hypothetical protein -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18144.12 Da        Isoelectric Point: 5.2868

>NTDB_id=734478 N8I74_RS14190 WP_263123757.1 3061339..3061839(-) (ssb) [Chitiniphilus purpureus strain CD1]
MASLNKVLLIGNLGRDPEVRYLPSGGAVCNFSIATTERFKDKQGQQQEKTEWHNIVMYNRLAEIAGEYLKKGSSVYIEGR
IQTRKWQDKQTGADRYTTEIVADQMQMLSGRGGGGGQQGGYGGGGGDDFNQEYSAPPAPAARPQNAPAPRPAAPKNFDDF
EDDIPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=734478 N8I74_RS14190 WP_263123757.1 3061339..3061839(-) (ssb) [Chitiniphilus purpureus strain CD1]
ATGGCATCGCTGAACAAGGTTCTACTGATCGGCAACCTGGGGCGCGACCCCGAGGTGCGTTACCTGCCCAGCGGCGGGGC
CGTGTGCAACTTCAGCATTGCCACCACCGAGCGCTTCAAGGACAAGCAGGGCCAGCAGCAGGAAAAGACGGAGTGGCACA
ACATCGTCATGTACAACCGGCTGGCCGAAATTGCCGGCGAGTATCTGAAGAAGGGCAGCTCGGTCTATATCGAAGGCCGC
ATCCAGACCCGCAAGTGGCAGGACAAGCAGACCGGCGCCGACCGCTATACCACTGAGATCGTCGCCGACCAGATGCAGAT
GCTGTCCGGCCGGGGCGGCGGCGGTGGGCAGCAGGGCGGCTATGGCGGTGGTGGCGGTGACGATTTCAACCAGGAGTACA
GCGCGCCGCCCGCGCCGGCGGCCCGCCCCCAGAACGCACCGGCCCCACGCCCGGCCGCGCCGAAGAATTTCGACGATTTC
GAGGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria gonorrhoeae MS11

54.444

100

0.59
  ssb Neisseria meningitidis MC58

53.591

100

0.584
  ssb Vibrio cholerae strain A1552

52.747

100

0.578
  ssb Glaesserella parasuis strain SC1401

48.619

100

0.53