Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OEG80_RS02780 Genome accession   NZ_CP106752
Coordinates   644163..644822 (+) Length   219 a.a.
NCBI ID   WP_020444130.1    Uniprot ID   A0A9E9B299
Organism   Psychrobacter sp. SC65A.3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 639163..649822
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OEG80_RS02770 (SC65A3_00565) uvrA 639198..642104 (-) 2907 WP_263241641.1 excinuclease ABC subunit UvrA -
  OEG80_RS02775 (SC65A3_00566) - 642690..644054 (+) 1365 WP_133105127.1 MFS transporter -
  OEG80_RS02780 (SC65A3_00567) ssb 644163..644822 (+) 660 WP_020444130.1 single-stranded DNA-binding protein Machinery gene
  OEG80_RS02785 (SC65A3_00568) - 645320..645643 (+) 324 WP_020444129.1 H-NS histone family protein -
  OEG80_RS02790 (SC65A3_00569) gspN 645860..646690 (+) 831 WP_263241642.1 type II secretion system protein N -
  OEG80_RS02795 (SC65A3_00570) - 646691..647593 (+) 903 WP_263241643.1 type II secretion system protein N -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 23362.03 Da        Isoelectric Point: 5.7762

>NTDB_id=734447 OEG80_RS02780 WP_020444130.1 644163..644822(+) (ssb) [Psychrobacter sp. SC65A.3]
MRGVNKVIIIGNLGADPEARQFNNGGSVTNISVATSEQWTDKQSGEKREATEWHRISLFNRLGEIAAQYLRKGSKVYIEG
SLRTRKYQDPNGQDRYITEIRAEQMQMLDGSTGGSNDAGGGFGSNNQGGQSNQGSYGNQGGGFSNQGGQNDYGQQGGNQP
AQQGGYNQGGSASQGGHQNSFNNQNAPAQQNQFNKPTQAPAQSKPTAMPDGPVDDDIPF

Nucleotide


Download         Length: 660 bp        

>NTDB_id=734447 OEG80_RS02780 WP_020444130.1 644163..644822(+) (ssb) [Psychrobacter sp. SC65A.3]
ATGCGCGGTGTTAATAAAGTTATCATCATCGGTAACCTCGGTGCAGACCCTGAGGCACGTCAATTCAATAACGGCGGTAG
CGTGACCAATATTTCGGTTGCGACATCAGAGCAGTGGACAGACAAGCAAAGCGGTGAAAAAAGAGAAGCAACAGAATGGC
ATCGTATTTCGTTGTTCAATCGCTTGGGTGAAATCGCTGCGCAGTATCTTCGTAAAGGCAGTAAGGTATATATCGAAGGC
AGCTTACGTACCCGTAAATATCAAGATCCCAACGGACAAGACCGTTATATCACTGAAATTCGTGCTGAACAAATGCAAAT
GCTAGATGGCTCGACAGGTGGTAGTAATGATGCTGGTGGTGGCTTTGGTAGCAATAACCAAGGTGGTCAAAGCAACCAAG
GTAGCTATGGTAATCAGGGCGGCGGATTTAGTAACCAAGGTGGCCAGAACGACTATGGTCAGCAAGGAGGCAATCAGCCC
GCTCAACAAGGCGGTTATAATCAAGGCGGCAGTGCGTCACAGGGTGGTCATCAAAATAGCTTTAACAATCAGAATGCGCC
CGCTCAGCAGAATCAATTTAATAAACCGACTCAAGCACCAGCGCAGTCGAAGCCTACAGCAATGCCAGATGGCCCTGTAG
ACGATGACATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

49.545

100

0.498
  ssb Vibrio cholerae strain A1552

44.196

100

0.452
  ssb Neisseria gonorrhoeae MS11

38.636

100

0.388
  ssb Neisseria meningitidis MC58

38.889

98.63

0.384