Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   OEG80_RS01680 Genome accession   NZ_CP106752
Coordinates   392402..393457 (+) Length   351 a.a.
NCBI ID   WP_133104812.1    Uniprot ID   A0A9E9B4W0
Organism   Psychrobacter sp. SC65A.3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 387402..398457
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OEG80_RS01670 (SC65A3_00340) - 388809..389333 (+) 525 WP_263241437.1 DUF6586 family protein -
  OEG80_RS01675 (SC65A3_00341) - 389513..392206 (-) 2694 WP_263241438.1 transglycosylase domain-containing protein -
  OEG80_RS01680 (SC65A3_00342) comM 392402..393457 (+) 1056 WP_133104812.1 type IV pilus assembly protein PilM Machinery gene
  OEG80_RS01685 (SC65A3_00343) - 393457..394122 (+) 666 WP_133104811.1 PilN domain-containing protein -
  OEG80_RS01690 (SC65A3_00344) pilO 394119..394850 (+) 732 WP_263241440.1 type 4a pilus biogenesis protein PilO -
  OEG80_RS01695 (SC65A3_00345) - 394850..395389 (+) 540 WP_263241441.1 pilus assembly protein PilP -
  OEG80_RS01700 (SC65A3_00346) pilQ 395417..397795 (+) 2379 WP_263241443.1 type IV pilus secretin PilQ -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 38196.38 Da        Isoelectric Point: 4.4164

>NTDB_id=734444 OEG80_RS01680 WP_133104812.1 392402..393457(+) (comM) [Psychrobacter sp. SC65A.3]
MRLFTSKSRHLIGVDICTTSVKLVDIQRQQGVFHLRSYGTEILPEGVVIDKLIVDTEVVGNTIAGLARRCQAAGSSAATA
VSGSAVITKIIDMDMVLSDVEREAQIRLDADQYIPYPLEDVNLDFEVLGPSLINDDMVQVLLAASRSENVDQRVDALTFG
GLQTKIMDIESHAIERAFGLMADSLPNLPDLVALVDIGHNQTTLYVAKNGEFIYSREQLFGGSQLTEAIQNRYGLSAEEA
SISKRERALPDDYYTDVLTPFIENTIQQITRSLQFYFSSSQYSSIDHVVLAGGSSSIAGLAGMAQQRLGVPVSIANPFIN
MTIAPHIDHEQLAIDAPSLMAACGLALRSFD

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=734444 OEG80_RS01680 WP_133104812.1 392402..393457(+) (comM) [Psychrobacter sp. SC65A.3]
GTGAGGCTATTTACTTCTAAGAGTCGACATTTGATTGGCGTGGATATCTGTACCACCTCAGTGAAGTTGGTTGACATACA
GCGCCAACAAGGCGTTTTTCACCTAAGATCTTATGGTACTGAAATATTACCTGAAGGCGTAGTCATCGACAAACTCATTG
TAGACACGGAAGTGGTAGGCAATACTATAGCAGGCTTGGCAAGGCGTTGCCAAGCGGCGGGTAGTAGTGCAGCCACAGCA
GTCTCAGGATCAGCGGTGATTACTAAAATCATCGATATGGATATGGTGCTAAGTGACGTTGAGCGTGAAGCTCAAATTCG
TTTGGATGCTGACCAATACATACCTTATCCGCTAGAAGACGTCAATTTGGACTTTGAAGTATTGGGTCCCTCTCTTATCA
ATGATGACATGGTGCAAGTACTGCTTGCCGCCTCTCGTTCAGAAAACGTTGACCAAAGAGTTGATGCCTTAACCTTTGGT
GGTCTGCAAACCAAGATAATGGATATTGAGTCACATGCCATTGAGCGTGCTTTTGGCTTGATGGCAGACAGTCTGCCAAA
CTTGCCAGATTTGGTGGCGCTGGTTGATATCGGACACAATCAAACAACATTATATGTCGCCAAAAATGGCGAGTTTATCT
ATAGTCGTGAGCAGTTATTTGGAGGCAGTCAGCTGACAGAAGCCATCCAAAACCGCTATGGCTTGTCTGCTGAAGAAGCT
TCTATTAGTAAGCGCGAGCGTGCTCTACCTGATGATTACTATACCGATGTCTTAACACCATTTATAGAAAATACCATCCA
ACAAATCACTCGCTCTTTACAGTTTTATTTCTCCTCAAGTCAATATAGTAGTATCGATCATGTGGTTCTTGCTGGTGGCA
GTAGCTCTATTGCGGGTCTTGCTGGTATGGCGCAGCAGCGATTGGGCGTGCCTGTGAGTATTGCAAATCCGTTCATTAAT
ATGACTATTGCGCCGCATATCGATCATGAGCAACTGGCGATTGATGCACCCAGCTTAATGGCCGCTTGCGGTCTGGCGTT
AAGGAGCTTTGACTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-350)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

51.282

100

0.513
  pilM Acinetobacter baumannii D1279779

51.282

100

0.513
  comM Acinetobacter baylyi ADP1

47.863

100

0.479
  pilM Legionella pneumophila strain ERS1305867

40.793

100

0.41