Detailed information    

insolico Bioinformatically predicted

Overview


Name   tpc   Type   Machinery gene
Locus tag   NDM80_RS01340 Genome accession   NZ_CP106749
Coordinates   267370..268410 (-) Length   346 a.a.
NCBI ID   WP_003690743.1    Uniprot ID   A0AAQ1IL04
Organism   Neisseria gonorrhoeae strain 10723     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context


Location: 262370..273410
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDM80_RS01320 (NDM80_01320) - 263866..264492 (-) 627 WP_003687611.1 phosphoribosylanthranilate isomerase -
  NDM80_RS01325 (NDM80_01325) greB 264551..265042 (-) 492 WP_003687613.1 transcription elongation factor GreB -
  NDM80_RS01330 (NDM80_01330) purF 265142..266686 (-) 1545 WP_229930543.1 amidophosphoribosyltransferase -
  NDM80_RS01335 (NDM80_01335) - 266880..267377 (-) 498 WP_003687616.1 CvpA family protein -
  NDM80_RS01340 (NDM80_01340) tpc 267370..268410 (-) 1041 WP_003690743.1 cell division protein FtsN Machinery gene
  NDM80_RS01345 (NDM80_01345) folC 268424..269698 (-) 1275 WP_003687619.1 bifunctional tetrahydrofolate synthase/dihydrofolate synthase -
  NDM80_RS01350 (NDM80_01350) - 269729..270169 (-) 441 WP_003687622.1 protein YgfX -
  NDM80_RS01355 (NDM80_01355) - 270174..270533 (-) 360 WP_003687624.1 hypothetical protein -
  NDM80_RS01360 (NDM80_01360) - 270606..271334 (-) 729 WP_010357138.1 amino acid ABC transporter ATP-binding protein -
  NDM80_RS01365 (NDM80_01365) - 271376..271831 (-) 456 WP_003690747.1 hypothetical protein -
  NDM80_RS01370 (NDM80_01370) - 271942..272511 (-) 570 WP_003687630.1 GTP pyrophosphokinase -
  NDM80_RS01375 (NDM80_01375) rsmA 272526..273305 (-) 780 WP_003690749.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA -

Sequence


Protein


Download         Length: 346 a.a.        Molecular weight: 37006.18 Da        Isoelectric Point: 9.8118

>NTDB_id=734366 NDM80_RS01340 WP_003690743.1 267370..268410(-) (tpc) [Neisseria gonorrhoeae strain 10723]
MSENKQNEVLTGYEQLKRRNRRRLVTASSLVAASCILLAAALSSDPADSNPAPQAGETGATESQTANTAQTPALKSAAEN
GETAADKPQDLAGEDKPSAADSEISEPENVGAPLVLINDRLEDSNIKGLEESEKLQQAETAKTEPKQAKQRAAEKVSATA
DSTDTVAVEKPKRTAEPKPQKAERTAEAKPKAKETKTAEKVADKPKTAAEKTKPDTAKSDSAVKEAKKADKAEGKKTAEK
DRSDGKKHETAQKTDKADKTKTAEKEKSGKAGKKAAIQAGYAEKERALSLQRKMKAAGIDSTITEIMTDNGKVYRVKSSN
YKNARDAERDLNKLRVHGIAGQVTNE

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=734366 NDM80_RS01340 WP_003690743.1 267370..268410(-) (tpc) [Neisseria gonorrhoeae strain 10723]
ATGTCCGAAAACAAACAAAACGAAGTCCTGACCGGTTACGAACAGCTGAAACGGCGCAACCGCCGCCGCCTCGTAACGGC
AAGCTCCCTGGTTGCCGCCTCCTGCATCCTGCTGGCAGCCGCACTCAGTTCCGATCCTGCCGACAGCAATCCCGCACCGC
AGGCCGGCGAAACCGGCGCAACGGAAAGCCAAACGGCAAACACGGCACAAACCCCTGCCTTGAAATCCGCCGCCGAAAAC
GGGGAAACCGCCGCCGACAAACCGCAGGACTTGGCAGGCGAAGACAAGCCTTCTGCCGCCGACAGCGAAATCAGCGAGCC
TGAAAACGTAGGCGCGCCGCTGGTGCTGATTAACGACCGGCTCGAAGACAGCAACATCAAAGGTTTGGAAGAATCCGAGA
AACTGCAACAGGCAGAAACCGCCAAAACCGAACCGAAGCAGGCAAAACAACGCGCTGCCGAAAAAGTGTCGGCAACTGCC
GACAGTACGGATACGGTAGCGGTTGAAAAACCGAAACGCACTGCCGAACCCAAACCGCAAAAAGCGGAACGCACTGCCGA
AGCCAAGCCCAAAGCCAAAGAAACCAAAACCGCCGAAAAAGTTGCCGACAAACCGAAAACTGCTGCCGAAAAAACCAAAC
CGGATACGGCAAAATCCGACAGCGCGGTAAAAGAAGCGAAAAAAGCCGACAAGGCTGAAGGCAAAAAGACAGCCGAAAAA
GACCGTTCGGACGGCAAAAAACACGAAACGGCGCAAAAAACCGACAAAGCGGACAAAACCAAAACCGCCGAGAAGGAAAA
ATCCGGCAAGGCGGGCAAAAAAGCCGCCATTCAGGCAGGTTATGCCGAAAAAGAACGCGCCTTGAGCCTCCAGCGCAAAA
TGAAGGCGGCGGGTATCGATTCGACCATCACCGAAATCATGACCGACAACGGCAAAGTTTACCGCGTCAAATCAAGCAAC
TATAAAAACGCAAGGGATGCCGAACGCGATTTGAACAAACTGCGCGTGCACGGCATCGCCGGCCAGGTAACGAATGAATA
G

Domains


Predicted by InterproScan.

(272-344)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tpc Neisseria gonorrhoeae MS11

99.711

100

0.997