Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PALA16_RS10055 Genome accession   NZ_CP106744
Coordinates   2163590..2164225 (+) Length   211 a.a.
NCBI ID   WP_003091163.1    Uniprot ID   A0A0H2ZBU7
Organism   Pseudomonas aeruginosa strain PALA16     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2158590..2169225
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA16_RS10040 (PALA16_02003) - 2159296..2160540 (+) 1245 WP_003113987.1 lipoprotein-releasing ABC transporter permease subunit -
  PALA16_RS10045 (PALA16_02004) - 2160628..2161161 (-) 534 WP_003091165.1 DUF2062 domain-containing protein -
  PALA16_RS10050 (PALA16_02005) comA 2161292..2163517 (+) 2226 WP_016852665.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PALA16_RS10055 (PALA16_02006) exbB 2163590..2164225 (+) 636 WP_003091163.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PALA16_RS10060 (PALA16_02007) - 2164222..2164662 (+) 441 WP_003091161.1 ExbD/TolR family protein -
  PALA16_RS10065 (PALA16_02008) lpxK 2164662..2165660 (+) 999 WP_003091159.1 tetraacyldisaccharide 4'-kinase -
  PALA16_RS10070 (PALA16_02009) - 2165698..2165883 (+) 186 WP_003091157.1 Trm112 family protein -
  PALA16_RS10075 (PALA16_02010) kdsB 2165883..2166647 (+) 765 WP_016852666.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PALA16_RS10080 (PALA16_02011) - 2166647..2167111 (+) 465 WP_003106924.1 low molecular weight protein-tyrosine-phosphatase -
  PALA16_RS10085 (PALA16_02012) murB 2167108..2168127 (+) 1020 WP_019416379.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22890.06 Da        Isoelectric Point: 6.7278

>NTDB_id=734304 PALA16_RS10055 WP_003091163.1 2163590..2164225(+) (exbB) [Pseudomonas aeruginosa strain PALA16]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=734304 PALA16_RS10055 WP_003091163.1 2163590..2164225(+) (exbB) [Pseudomonas aeruginosa strain PALA16]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGAA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATCCTCGCCGCCGGTCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGTACCATCGCCGCGATGGCGCCGCTGCTGGGCCTGCTGGGTACGGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTCGCCGCGGGCATCTCCAAGGCATTGATCACCACCGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGGCGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZBU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81