Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   N7220_RS06440 Genome accession   NZ_CP106736
Coordinates   1410912..1411430 (+) Length   172 a.a.
NCBI ID   WP_283150636.1    Uniprot ID   -
Organism   Silvimonas soli strain 17-6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1405912..1416430
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N7220_RS06430 - 1407288..1408628 (+) 1341 WP_283150634.1 MFS transporter -
  N7220_RS06435 - 1408940..1410301 (+) 1362 WP_283150635.1 carbohydrate porin -
  N7220_RS06440 ssb 1410912..1411430 (+) 519 WP_283150636.1 single-stranded DNA-binding protein Machinery gene
  N7220_RS06445 - 1411531..1411920 (-) 390 WP_283150637.1 helix-turn-helix domain-containing protein -
  N7220_RS06450 - 1412011..1412661 (+) 651 WP_283150638.1 hypothetical protein -
  N7220_RS06455 galK 1412739..1413902 (-) 1164 WP_283150639.1 galactokinase -
  N7220_RS06460 - 1413902..1414987 (-) 1086 WP_283150640.1 UDP-glucose--hexose-1-phosphate uridylyltransferase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18731.75 Da        Isoelectric Point: 5.2868

>NTDB_id=734201 N7220_RS06440 WP_283150636.1 1410912..1411430(+) (ssb) [Silvimonas soli strain 17-6]
MASLNKVLLIGNLGRDPETRYLPSGGAVCNFSIATTDRYKDKQGQQQEKTEWHNITMYNRLAEIAGQYLKKGSAVYIEGR
LQTRKWQDKQTGADRYTTEIIADQMQMLAGRGGAGGGAEQGGGGYDEFNQEYSAQQSAPAPAPAPRPQQAAAPAAKPAPA
RSFDDFEDDIPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=734201 N7220_RS06440 WP_283150636.1 1410912..1411430(+) (ssb) [Silvimonas soli strain 17-6]
ATGGCATCGCTCAACAAAGTGTTGCTGATCGGCAACCTGGGCCGTGATCCTGAAACCCGCTACCTGCCTTCGGGCGGTGC
CGTGTGCAATTTCAGCATCGCCACCACCGATCGCTACAAAGACAAGCAAGGTCAGCAGCAAGAAAAGACGGAATGGCACA
ACATCACCATGTACAACCGCCTGGCTGAGATCGCCGGTCAGTACCTGAAAAAAGGTAGCGCGGTTTACATTGAAGGCCGT
CTGCAGACCCGTAAATGGCAAGACAAACAAACCGGCGCGGATCGCTACACCACTGAAATCATCGCTGACCAGATGCAGAT
GCTGGCTGGCCGCGGTGGTGCGGGTGGCGGTGCGGAACAAGGCGGCGGCGGTTACGACGAGTTCAACCAGGAATACAGCG
CGCAACAATCCGCGCCAGCCCCGGCTCCGGCACCACGTCCGCAGCAAGCTGCAGCACCGGCGGCAAAGCCTGCTCCAGCC
CGTAGCTTTGATGACTTTGAGGACGACATTCCTTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria gonorrhoeae MS11

55.172

100

0.558
  ssb Neisseria meningitidis MC58

55.172

100

0.558
  ssb Vibrio cholerae strain A1552

52.486

100

0.552
  ssb Glaesserella parasuis strain SC1401

47.541

100

0.506