NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	N7220_RS06040	Genome accession	NZ_CP106736
Coordinates	1329924..1330682 (+)	Length	252 a.a.
NCBI ID	WP_390901568.1	Uniprot ID	-
Organism	Silvimonas soli strain 17-6
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1324924..1335682

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
N7220_RS06025	-	1325226..1326494 (+)	1269	WP_283150555.1	HlyC/CorC family transporter	-
N7220_RS06030	pilB	1326795..1328504 (+)	1710	WP_283150556.1	type IV-A pilus assembly ATPase PilB	Machinery gene
N7220_RS06035	pilC	1328569..1329807 (+)	1239	WP_283150557.1	type II secretion system F family protein	Machinery gene
N7220_RS06040	pilD	1329924..1330682 (+)	759	WP_390901568.1	prepilin peptidase	Machinery gene
N7220_RS06045	coaE	1330708..1331316 (+)	609	WP_283150559.1	dephospho-CoA kinase	-
N7220_RS06050	zapD	1331480..1332238 (+)	759	WP_283150560.1	cell division protein ZapD	-
N7220_RS06055	-	1332281..1332478 (+)	198	WP_283150561.1	DNA gyrase inhibitor YacG	-
N7220_RS06060	-	1332571..1333323 (+)	753	WP_283150562.1	GNAT family N-acetyltransferase	-
N7220_RS06065	-	1333483..1334370 (+)	888	WP_283150563.1	1-acyl-sn-glycerol-3-phosphate acyltransferase	-
N7220_RS06070	-	1334408..1335232 (-)	825	WP_283150564.1	symmetrical bis(5'-nucleosyl)-tetraphosphatase	-

Sequence

Protein

Download Length: 252 a.a. Molecular weight: 26832.88 Da Isoelectric Point: 7.5875

                                >NTDB_id=734200 N7220_RS06040 WP_390901568.1 1329924..1330682(+) (pilD) [Silvimonas soli strain 17-6]

MIEAQFRQECAVIDLPVNAPLPAPPSRYNLVVPRSACPSCGHQISALENIPLLSWLALRGKCKGCGAPISIRYPAVELLT

GLLTAWVGAHYGFSGEALAAIVLTWALIALFFIDADTYLLPDSITLPLLWIGLLFNIDHGFVSLQSAVIGAAAGYLALWC

VFWLFKLATGKEGMGYGDFKLLAALGAWFGWQSLPIIVLLSSVAGAVLGIIMTVAAKRGFGKPMPFGPYLAVAGFATLLW

GPQLQSLLFGGL

Nucleotide

Download Length: 759 bp

                                >NTDB_id=734200 N7220_RS06040 WP_390901568.1 1329924..1330682(+) (pilD) [Silvimonas soli strain 17-6]

ATGATCGAAGCCCAATTTCGCCAGGAATGCGCCGTCATTGATCTTCCGGTGAATGCGCCATTACCCGCGCCACCTAGCCG

TTACAATCTGGTGGTGCCCCGTTCGGCTTGCCCATCGTGTGGACATCAGATTAGCGCGCTGGAGAACATCCCTCTGCTTA

GCTGGCTGGCCTTGCGCGGCAAATGCAAGGGCTGTGGAGCCCCAATCAGCATCCGCTATCCGGCCGTGGAGCTACTGACA

GGCCTGCTAACAGCCTGGGTCGGGGCGCATTACGGTTTTTCAGGTGAGGCACTGGCAGCCATTGTGCTGACTTGGGCCCT

GATTGCGCTGTTCTTTATTGACGCAGACACGTATTTGTTGCCTGACTCCATTACGCTCCCGCTACTATGGATCGGTCTGC

TATTCAATATCGATCATGGCTTTGTCTCGCTGCAATCTGCCGTGATCGGCGCAGCTGCCGGTTATCTGGCGCTGTGGTGT

GTGTTCTGGTTATTCAAACTGGCCACCGGCAAGGAAGGGATGGGCTACGGCGACTTTAAACTGCTCGCTGCGCTGGGCGC

CTGGTTTGGCTGGCAAAGCCTGCCCATCATCGTCTTGCTGTCTTCAGTTGCTGGCGCGGTATTGGGTATCATCATGACCG

TGGCGGCCAAACGCGGCTTTGGCAAACCCATGCCATTCGGCCCCTATCTGGCGGTCGCCGGTTTCGCCACCTTGTTGTGG

GGACCTCAGCTGCAAAGCCTGCTCTTTGGTGGCTTGTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(25-90)

Type IV leader peptidase family (Peptidase_A24)

(101-210)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Vibrio cholerae strain A1552	54.582	99.603	0.544
pilD	Vibrio campbellii strain DS40M4	52.964	100	0.532
pilD	Acinetobacter baumannii D1279779	50.598	99.603	0.504
pilD	Acinetobacter nosocomialis M2	50.598	99.603	0.504
pilD	Neisseria gonorrhoeae MS11	54.545	87.302	0.476

Detailed information NTG0734200