Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   N7220_RS06035 Genome accession   NZ_CP106736
Coordinates   1328569..1329807 (+) Length   412 a.a.
NCBI ID   WP_283150557.1    Uniprot ID   -
Organism   Silvimonas soli strain 17-6     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1323569..1334807
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N7220_RS06020 - 1324347..1325153 (+) 807 WP_283150554.1 inner membrane protein YpjD -
  N7220_RS06025 - 1325226..1326494 (+) 1269 WP_283150555.1 HlyC/CorC family transporter -
  N7220_RS06030 pilB 1326795..1328504 (+) 1710 WP_283150556.1 type IV-A pilus assembly ATPase PilB Machinery gene
  N7220_RS06035 pilC 1328569..1329807 (+) 1239 WP_283150557.1 type II secretion system F family protein Machinery gene
  N7220_RS06040 pilD 1329924..1330682 (+) 759 WP_390901568.1 prepilin peptidase Machinery gene
  N7220_RS06045 coaE 1330708..1331316 (+) 609 WP_283150559.1 dephospho-CoA kinase -
  N7220_RS06050 zapD 1331480..1332238 (+) 759 WP_283150560.1 cell division protein ZapD -
  N7220_RS06055 - 1332281..1332478 (+) 198 WP_283150561.1 DNA gyrase inhibitor YacG -
  N7220_RS06060 - 1332571..1333323 (+) 753 WP_283150562.1 GNAT family N-acetyltransferase -
  N7220_RS06065 - 1333483..1334370 (+) 888 WP_283150563.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45614.68 Da        Isoelectric Point: 10.0163

>NTDB_id=734199 N7220_RS06035 WP_283150557.1 1328569..1329807(+) (pilC) [Silvimonas soli strain 17-6]
MATTTARPAKQTLKVKEYTYSWEGKDRNGKIVKGESRASGEAVIKTHLRRQGINVIRVKRQRVSGGKRITDEDITMFTRQ
LSTMLKSGVPLLLSFDIVAKGHSNPSVTKLLMEIKSDIESGFSMTQAFRKHPKYFDALYCNLIQAGEQAGILDTLLARLA
TYKEKMLGVKKKIKSAMFYPTAVIVAAFVITAVIMIFVIPAFKDLFSSFGADLPGPTLLVMAISDYFVHYWWLIFGGIFG
GFYFFMKAWRRSEAMQIVMDRWLLKLPVLGDIMKNSILARWSRTLSTMFAAGVPLVESLESVGGAAGNHLYKIATRKIQT
EVSTGTSLTTAMQNVNVFPNMVLQMTSIGEESGSLDAMLSKVADYYEEEVDNAVEALSSLMEPIIMVVLGTLIGGLVIAM
YLPIFKMGQAVG

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=734199 N7220_RS06035 WP_283150557.1 1328569..1329807(+) (pilC) [Silvimonas soli strain 17-6]
ATGGCGACAACAACAGCCAGGCCAGCCAAGCAGACGCTGAAGGTCAAGGAATATACCTACAGTTGGGAAGGCAAGGATCG
CAACGGCAAGATCGTCAAAGGCGAAAGCCGGGCCAGCGGCGAAGCCGTGATCAAAACCCATTTGCGGCGGCAAGGTATCA
ACGTTATCCGGGTGAAGCGTCAGCGCGTCAGCGGCGGCAAACGCATTACCGACGAAGATATCACCATGTTTACCCGGCAG
CTTTCCACCATGCTCAAGTCGGGCGTGCCGTTGTTGCTGTCGTTCGATATTGTGGCCAAGGGTCATAGCAACCCATCGGT
GACCAAGCTGCTGATGGAAATCAAATCGGATATCGAGAGCGGGTTTTCCATGACCCAGGCTTTCCGCAAGCACCCGAAAT
ATTTCGATGCACTGTATTGCAACTTGATCCAGGCCGGTGAGCAAGCCGGTATTCTGGATACGCTGCTGGCGCGTCTGGCA
ACTTACAAAGAAAAGATGCTGGGCGTTAAAAAGAAGATCAAGTCGGCCATGTTTTACCCGACTGCAGTGATTGTGGCAGC
GTTTGTCATCACCGCCGTCATCATGATCTTCGTGATTCCAGCCTTTAAAGATTTGTTCTCCAGCTTCGGCGCCGATTTGC
CAGGCCCAACGCTGCTGGTGATGGCCATCTCCGACTACTTTGTGCATTACTGGTGGTTAATCTTTGGCGGCATTTTTGGC
GGTTTCTATTTCTTCATGAAAGCATGGCGACGTTCCGAGGCCATGCAGATCGTAATGGATCGCTGGTTGCTCAAGCTGCC
GGTGCTGGGCGACATCATGAAGAACTCGATTCTGGCCCGCTGGAGCCGGACGTTGTCCACCATGTTTGCTGCGGGTGTGC
CGCTGGTTGAGTCGCTCGAATCTGTGGGTGGCGCCGCCGGCAATCATCTGTACAAGATTGCCACTCGCAAAATCCAGACC
GAAGTTTCCACCGGGACCAGTCTGACCACGGCGATGCAGAACGTAAATGTGTTTCCCAACATGGTTTTGCAAATGACTTC
GATTGGCGAAGAGTCCGGCTCGCTGGACGCCATGCTCAGCAAGGTCGCCGACTACTACGAAGAAGAAGTGGATAATGCGG
TAGAAGCCTTGTCCAGCCTGATGGAACCTATCATCATGGTGGTCTTGGGCACCTTGATTGGCGGTTTGGTGATCGCCATG
TATCTGCCAATTTTCAAAATGGGTCAGGCGGTCGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(77-200)

Type II secretion system (T2SS), protein F (T2SSF)

(281-403)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

51.889

96.359

0.5
  pilC Pseudomonas stutzeri DSM 10701

51.25

97.087

0.498
  pilG Neisseria gonorrhoeae MS11

50.754

96.602

0.49
  pilC Acinetobacter baumannii D1279779

50.503

96.602

0.488
  pilG Neisseria meningitidis 44/76-A

50.251

96.602

0.485
  pilC Acinetobacter baylyi ADP1

50.126

96.359

0.483
  pilC Vibrio cholerae strain A1552

38.386

99.272

0.381
  pilC Vibrio campbellii strain DS40M4

36.855

98.786

0.364