Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   N7985_RS21015 Genome accession   NZ_CP106673
Coordinates   4075111..4075629 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis strain SRCM116268     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4070111..4080629
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N7985_RS20985 (N7985_20985) yyaJ 4070615..4071970 (+) 1356 WP_262319546.1 MFS transporter -
  N7985_RS20990 (N7985_20990) maa 4072004..4072558 (-) 555 WP_015250785.1 sugar O-acetyltransferase -
  N7985_RS20995 (N7985_20995) yyaH 4072574..4072954 (-) 381 WP_015715075.1 VOC family protein -
  N7985_RS21000 (N7985_21000) ccpB 4073010..4073945 (-) 936 WP_015715076.1 transcriptional regulator CcpB -
  N7985_RS21005 (N7985_21005) xth 4074005..4074763 (-) 759 WP_015250782.1 exodeoxyribonuclease III -
  N7985_RS21010 (N7985_21010) rpsR 4074828..4075067 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  N7985_RS21015 (N7985_21015) ssbA 4075111..4075629 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  N7985_RS21020 (N7985_21020) rpsF 4075670..4075957 (-) 288 WP_003244064.1 30S ribosomal protein S6 -
  N7985_RS21025 (N7985_21025) ychF 4076068..4077168 (-) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  N7985_RS21030 (N7985_21030) yyaE 4077295..4079298 (-) 2004 WP_015715077.1 molybdopterin-dependent oxidoreductase -
  N7985_RS21035 (N7985_21035) yyzM 4079349..4079555 (-) 207 WP_003226838.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=734006 N7985_RS21015 WP_003219228.1 4075111..4075629(-) (ssbA) [Bacillus subtilis strain SRCM116268]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=734006 N7985_RS21015 WP_003219228.1 4075111..4075629(-) (ssbA) [Bacillus subtilis strain SRCM116268]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378