Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   N7985_RS12255 Genome accession   NZ_CP106673
Coordinates   2401369..2401704 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus subtilis strain SRCM116268     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2396369..2406704
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N7985_RS12235 (N7985_12235) gcvT 2396962..2398050 (-) 1089 WP_041850013.1 glycine cleavage system aminomethyltransferase GcvT -
  N7985_RS12240 (N7985_12240) hepAA 2398491..2400164 (+) 1674 WP_041850014.1 DEAD/DEAH box helicase -
  N7985_RS12245 (N7985_12245) yqhG 2400185..2400979 (+) 795 WP_003230200.1 YqhG family protein -
  N7985_RS12250 (N7985_12250) sinI 2401162..2401335 (+) 174 WP_003230187.1 anti-repressor SinI Regulator
  N7985_RS12255 (N7985_12255) sinR 2401369..2401704 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  N7985_RS12260 (N7985_12260) tasA 2401797..2402582 (-) 786 WP_015251717.1 biofilm matrix protein TasA -
  N7985_RS12265 (N7985_12265) sipW 2402646..2403218 (-) 573 WP_003246088.1 signal peptidase I SipW -
  N7985_RS12270 (N7985_12270) tapA 2403202..2403963 (-) 762 WP_015251716.1 amyloid fiber anchoring/assembly protein TapA -
  N7985_RS12275 (N7985_12275) yqzG 2404235..2404561 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  N7985_RS12280 (N7985_12280) spoIITA 2404603..2404782 (-) 180 WP_003230176.1 YqzE family protein -
  N7985_RS12285 (N7985_12285) comGG 2404853..2405227 (-) 375 WP_015251714.1 ComG operon protein ComGG Machinery gene
  N7985_RS12290 (N7985_12290) comGF 2405228..2405611 (-) 384 WP_041850015.1 ComG operon protein ComGF Machinery gene
  N7985_RS12295 (N7985_12295) comGE 2405637..2405984 (-) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  N7985_RS12300 (N7985_12300) comGD 2405968..2406399 (-) 432 WP_004398628.1 comG operon protein ComGD Machinery gene
  N7985_RS12305 (N7985_12305) comGC 2406389..2406685 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=733969 N7985_RS12255 WP_003226345.1 2401369..2401704(+) (sinR) [Bacillus subtilis strain SRCM116268]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=733969 N7985_RS12255 WP_003226345.1 2401369..2401704(+) (sinR) [Bacillus subtilis strain SRCM116268]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1