Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   N7985_RS12300 Genome accession   NZ_CP106673
Coordinates   2405968..2406399 (-) Length   143 a.a.
NCBI ID   WP_004398628.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM116268     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2400968..2411399
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N7985_RS12250 (N7985_12250) sinI 2401162..2401335 (+) 174 WP_003230187.1 anti-repressor SinI Regulator
  N7985_RS12255 (N7985_12255) sinR 2401369..2401704 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  N7985_RS12260 (N7985_12260) tasA 2401797..2402582 (-) 786 WP_015251717.1 biofilm matrix protein TasA -
  N7985_RS12265 (N7985_12265) sipW 2402646..2403218 (-) 573 WP_003246088.1 signal peptidase I SipW -
  N7985_RS12270 (N7985_12270) tapA 2403202..2403963 (-) 762 WP_015251716.1 amyloid fiber anchoring/assembly protein TapA -
  N7985_RS12275 (N7985_12275) yqzG 2404235..2404561 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  N7985_RS12280 (N7985_12280) spoIITA 2404603..2404782 (-) 180 WP_003230176.1 YqzE family protein -
  N7985_RS12285 (N7985_12285) comGG 2404853..2405227 (-) 375 WP_015251714.1 ComG operon protein ComGG Machinery gene
  N7985_RS12290 (N7985_12290) comGF 2405228..2405611 (-) 384 WP_041850015.1 ComG operon protein ComGF Machinery gene
  N7985_RS12295 (N7985_12295) comGE 2405637..2405984 (-) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  N7985_RS12300 (N7985_12300) comGD 2405968..2406399 (-) 432 WP_004398628.1 comG operon protein ComGD Machinery gene
  N7985_RS12305 (N7985_12305) comGC 2406389..2406685 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  N7985_RS12310 (N7985_12310) comGB 2406699..2407736 (-) 1038 WP_041850016.1 comG operon protein ComGB Machinery gene
  N7985_RS12315 (N7985_12315) comGA 2407723..2408793 (-) 1071 WP_004399124.1 competence protein ComGA Machinery gene
  N7985_RS12320 (N7985_12320) corA 2409204..2410157 (-) 954 WP_029317911.1 magnesium transporter CorA -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16008.62 Da        Isoelectric Point: 10.0432

>NTDB_id=733973 N7985_RS12300 WP_004398628.1 2405968..2406399(-) (comGD) [Bacillus subtilis strain SRCM116268]
MNIKLNEEKGFTLLESLLVLSLASILLVAVFTTLPPAYDNTAVRQAASQLKNDIMLTQQTAISRQQRTKILFHKKEYQLV
IGDTVIERPYATGLSIELLTLKDRLEFNEKGHPNAGGKIRVKGHAVYDITVYLGSGRVNVERK

Nucleotide


Download         Length: 432 bp        

>NTDB_id=733973 N7985_RS12300 WP_004398628.1 2405968..2406399(-) (comGD) [Bacillus subtilis strain SRCM116268]
TTGAACATTAAATTAAACGAGGAGAAGGGGTTTACCCTTTTAGAAAGTTTGCTTGTGTTAAGCCTTGCCTCTATCCTCCT
GGTGGCCGTCTTCACTACACTTCCTCCTGCTTATGACAATACAGCTGTCCGACAGGCAGCAAGTCAGCTGAAAAATGATA
TTATGCTCACACAGCAGACTGCTATTTCCCGTCAACAAAGAACAAAAATTCTCTTTCATAAAAAAGAATATCAATTAGTC
ATTGGTGATACGGTTATTGAACGTCCGTATGCAACGGGACTTTCTATAGAACTGCTGACATTAAAAGACCGTTTGGAATT
TAATGAGAAAGGGCACCCGAATGCAGGCGGAAAAATACGAGTAAAAGGCCATGCCGTTTATGACATAACAGTTTATCTAG
GGAGCGGGAGAGTCAATGTGGAGAGAAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Bacillus subtilis subsp. subtilis str. 168

100

100

1