Detailed information NTG0733968

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: P4B08_RS06945
• Genome accession: NZ_CP120704
• Coordinates: 1479540..1480544 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain SE5356
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1474540..1485544

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
P4B08_RS06915 (P4B08_06920)	fghA	1474632..1475483 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
P4B08_RS06920 (P4B08_06925)	ispF	1475554..1476027 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
P4B08_RS06925 (P4B08_06930)	truD	1476024..1477091 (+)	1068	WP_023114621.1	tRNA pseudouridine(13) synthase TruD	-
P4B08_RS06930 (P4B08_06935)	surE	1477079..1477828 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
P4B08_RS06935 (P4B08_06940)	-	1477861..1478496 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
P4B08_RS06940 (P4B08_06945)	-	1478542..1479435 (+)	894	WP_017148388.1	peptidoglycan DD-metalloendopeptidase family protein	-
P4B08_RS06945 (P4B08_06950)	rpoS	1479540..1480544 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
P4B08_RS06950 (P4B08_06955)	fdxA	1480971..1481294 (-)	324	WP_003092272.1	ferredoxin FdxA	-
P4B08_RS06955 (P4B08_06960)	mutS	1481361..1483901 (-)	2541	WP_003163273.1	DNA mismatch repair protein MutS	-
P4B08_RS06960 (P4B08_06965)	-	1484156..1485256 (+)	1101	WP_071540874.1	hypothetical protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=733968 P4B08_RS06945 WP_003113871.1 1479540..1480544(+) (rpoS) [Pseudomonas aeruginosa strain SE5356]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=733968 P4B08_RS06945 WP_003113871.1 1479540..1480544(+) (rpoS) [Pseudomonas aeruginosa strain SE5356]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGTCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653