Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   N8A98_RS20800 Genome accession   NZ_CP104965
Coordinates   3671681..3672202 (-) Length   173 a.a.
NCBI ID   WP_262168203.1    Uniprot ID   -
Organism   Devosia neptuniae strain A18/4-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3666681..3677202
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N8A98_RS20785 (N8A98_20785) - 3666846..3669227 (+) 2382 WP_262168200.1 RND family transporter -
  N8A98_RS20790 (N8A98_20790) - 3669308..3669829 (+) 522 WP_262168201.1 hypothetical protein -
  N8A98_RS20795 (N8A98_20795) - 3669930..3671321 (+) 1392 WP_262168202.1 diguanylate cyclase domain-containing protein -
  N8A98_RS20800 (N8A98_20800) ssb 3671681..3672202 (-) 522 WP_262168203.1 single-stranded DNA-binding protein Machinery gene
  N8A98_RS20805 (N8A98_20805) - 3672466..3672711 (-) 246 WP_262168205.1 hypothetical protein -
  N8A98_RS20810 (N8A98_20810) - 3672891..3673535 (+) 645 WP_262168207.1 LysE family translocator -
  N8A98_RS20815 (N8A98_20815) uvrA 3673763..3676654 (+) 2892 WP_262172092.1 excinuclease ABC subunit UvrA -
  N8A98_RS20820 (N8A98_20820) - 3676933..3677085 (+) 153 WP_162740095.1 hypothetical protein -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18369.19 Da        Isoelectric Point: 5.9618

>NTDB_id=733620 N8A98_RS20800 WP_262168203.1 3671681..3672202(-) (ssb) [Devosia neptuniae strain A18/4-1]
MAGSVNKVILVGNLGADPEVRNLPSGGKVVNLSIATSERWKDRTSGEQREKTEWHRVVIFSEGLTRVAESYLRKGSKVYI
EGQLQTRKWQDQSGQDKYSTEIVLQGFNSNLTLLDGRGEGENAGGGGGDGGFRSADNNGGFRGARPAGGGGAQRPASNAP
AFEPGGMDDDIPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=733620 N8A98_RS20800 WP_262168203.1 3671681..3672202(-) (ssb) [Devosia neptuniae strain A18/4-1]
ATGGCAGGCAGCGTCAACAAGGTGATCCTCGTCGGCAATCTGGGTGCCGATCCCGAAGTGCGCAATCTGCCGAGCGGCGG
CAAGGTGGTGAACCTATCCATCGCCACCTCGGAGCGCTGGAAGGATCGCACCAGCGGCGAGCAGCGCGAAAAGACCGAGT
GGCACCGGGTAGTGATCTTCTCGGAAGGCCTCACCCGCGTGGCGGAAAGCTATCTGCGCAAGGGCAGCAAGGTCTATATC
GAGGGCCAGTTGCAGACCCGCAAATGGCAGGACCAGTCCGGCCAGGACAAATATTCGACCGAAATCGTGCTGCAGGGCTT
CAATTCGAACCTGACCCTGCTTGATGGGCGCGGTGAAGGCGAGAATGCCGGCGGCGGTGGTGGCGATGGCGGTTTCCGCA
GCGCCGACAACAATGGCGGCTTCCGCGGTGCCCGTCCTGCGGGTGGCGGCGGCGCCCAGCGCCCGGCCTCCAACGCCCCG
GCTTTCGAGCCCGGCGGCATGGATGATGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

50.265

100

0.549
  ssb Vibrio cholerae strain A1552

53.073

100

0.549
  ssb Neisseria gonorrhoeae MS11

39.227

100

0.41
  ssb Neisseria meningitidis MC58

38.674

100

0.405