Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   N8E87_RS10775 Genome accession   NZ_CP104917
Coordinates   2206697..2207209 (-) Length   170 a.a.
NCBI ID   WP_264244676.1    Uniprot ID   -
Organism   Avibacterium paragallinarum strain AP-2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2201697..2212209
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N8E87_RS10755 (N8E87_10755) - 2202459..2204489 (-) 2031 WP_264246847.1 DNA topoisomerase III -
  N8E87_RS10760 (N8E87_10760) - 2204623..2205618 (+) 996 WP_035686652.1 hypothetical protein -
  N8E87_RS10765 (N8E87_10765) - 2205587..2206000 (-) 414 WP_035686655.1 hypothetical protein -
  N8E87_RS10770 (N8E87_10770) - 2206142..2206621 (-) 480 WP_264244674.1 hypothetical protein -
  N8E87_RS10775 (N8E87_10775) ssb 2206697..2207209 (-) 513 WP_264244676.1 single-stranded DNA-binding protein Machinery gene
  N8E87_RS10780 (N8E87_10780) - 2207410..2207751 (-) 342 WP_035689393.1 hypothetical protein -
  N8E87_RS10785 (N8E87_10785) - 2207930..2208442 (-) 513 WP_035689394.1 DUF3158 family protein -
  N8E87_RS10790 (N8E87_10790) - 2208483..2209235 (-) 753 WP_035689396.1 PFL_4669 family integrating conjugative element protein -
  N8E87_RS10795 (N8E87_10795) - 2209847..2211073 (-) 1227 WP_046097475.1 STY4528 family pathogenicity island replication protein -
  N8E87_RS10800 (N8E87_10800) - 2211236..2211787 (-) 552 WP_035688466.1 DUF2857 domain-containing protein -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 19168.19 Da        Isoelectric Point: 5.0100

>NTDB_id=733508 N8E87_RS10775 WP_264244676.1 2206697..2207209(-) (ssb) [Avibacterium paragallinarum strain AP-2]
MAGINKVIIVGNLGADPEVRTMPNGEAVANISVATSESWIDKNTSEKRELTEWHRIVFYRRQAEIVGEYLRKGSKVYVEG
RLRTRKWQDQNGQDRYTTEIQGDVLQMLDSRPERYQAGQATQVGAAQQGRNQYAQQSQPAYQTPQTQTSASQPVPPPIPD
DGFDDDQIPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=733508 N8E87_RS10775 WP_264244676.1 2206697..2207209(-) (ssb) [Avibacterium paragallinarum strain AP-2]
ATGGCAGGGATTAATAAAGTCATTATCGTGGGGAATCTTGGTGCAGATCCTGAAGTAAGAACAATGCCGAATGGTGAGGC
TGTAGCCAATATTAGTGTCGCAACCAGTGAAAGTTGGATAGATAAGAATACAAGTGAAAAACGTGAATTAACCGAGTGGC
ATCGGATTGTGTTTTATCGTCGTCAAGCTGAGATTGTGGGAGAATATTTACGCAAAGGCTCGAAAGTTTATGTCGAGGGG
CGATTAAGAACCCGTAAATGGCAAGACCAAAATGGGCAAGATCGTTATACCACTGAAATTCAAGGCGATGTACTTCAAAT
GTTAGATAGCCGCCCTGAGCGCTATCAAGCAGGGCAGGCAACGCAAGTTGGAGCGGCACAACAAGGTCGTAATCAATATG
CGCAACAGAGTCAGCCTGCCTACCAAACACCACAAACTCAAACTTCAGCATCTCAGCCTGTACCACCGCCTATCCCTGAT
GATGGCTTTGACGATGATCAGATTCCTTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

61.749

100

0.665
  ssb Vibrio cholerae strain A1552

55.307

100

0.582
  ssb Neisseria meningitidis MC58

47.191

100

0.494
  ssb Neisseria gonorrhoeae MS11

47.126

100

0.482