Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   N8E87_RS02155 Genome accession   NZ_CP104917
Coordinates   430041..430397 (-) Length   118 a.a.
NCBI ID   WP_264245671.1    Uniprot ID   -
Organism   Avibacterium paragallinarum strain AP-2     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 425041..435397
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N8E87_RS02120 (N8E87_02120) - 425173..425550 (-) 378 WP_017805060.1 hypothetical protein -
  N8E87_RS02125 (N8E87_02125) - 425693..426295 (+) 603 WP_035685401.1 beta-phosphoglucomutase family hydrolase -
  N8E87_RS02130 (N8E87_02130) - 426296..426904 (+) 609 WP_264245665.1 sugar O-acetyltransferase -
  N8E87_RS02135 (N8E87_02135) - 426897..427355 (+) 459 WP_110479107.1 YqaA family protein -
  N8E87_RS02140 (N8E87_02140) luxS 427579..428085 (+) 507 WP_264245666.1 S-ribosylhomocysteine lyase -
  N8E87_RS02145 (N8E87_02145) hemW 428153..429307 (-) 1155 WP_264245668.1 radical SAM family heme chaperone HemW -
  N8E87_RS02150 (N8E87_02150) rdgB 429307..429903 (-) 597 WP_035685390.1 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase -
  N8E87_RS02155 (N8E87_02155) comE1/comEA 430041..430397 (-) 357 WP_264245671.1 helix-hairpin-helix domain-containing protein Machinery gene
  N8E87_RS02160 (N8E87_02160) - 430660..431973 (-) 1314 WP_264245673.1 NCS2 family permease -
  N8E87_RS02165 (N8E87_02165) - 432004..432144 (+) 141 WP_156127777.1 hypothetical protein -
  N8E87_RS02170 (N8E87_02170) galE 432180..433196 (+) 1017 WP_264245675.1 UDP-glucose 4-epimerase GalE -
  N8E87_RS02175 (N8E87_02175) - 433263..434531 (+) 1269 WP_264246734.1 AmpG family muropeptide MFS transporter -

Sequence

Protein


Download         Length: 118 a.a.        Molecular weight: 12867.73 Da        Isoelectric Point: 7.0137

>NTDB_id=733496 N8E87_RS02155 WP_264245671.1 430041..430397(-) (comE1/comEA) [Avibacterium paragallinarum strain AP-2]
MKIKTILSSLILAITFIGSVYADETVNPPATTQVTDNKTIDTTFIGEKLNINTASANEIQKALVGIGAKKAEAIVEYREQ
HGKFIAPEQLLEVKGIGKAIFEKNKDRIDLSSFNSNSQ

Nucleotide


Download         Length: 357 bp        

>NTDB_id=733496 N8E87_RS02155 WP_264245671.1 430041..430397(-) (comE1/comEA) [Avibacterium paragallinarum strain AP-2]
ATGAAAATTAAAACGATTTTATCTTCTCTCATTTTGGCAATAACATTTATTGGTTCGGTTTATGCTGATGAAACAGTGAA
TCCACCAGCCACGACACAAGTGACGGATAATAAAACTATCGACACCACATTTATTGGCGAAAAGCTCAATATTAATACGG
CAAGTGCAAATGAAATTCAGAAAGCCTTAGTAGGCATTGGGGCGAAGAAAGCAGAAGCTATCGTGGAATATCGAGAACAA
CACGGTAAATTTATCGCACCAGAACAACTATTAGAAGTAAAGGGGATTGGAAAAGCGATTTTTGAAAAAAATAAAGATCG
CATAGATTTATCTTCATTTAATAGTAATAGCCAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(47-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

51.786

94.915

0.492
  comEA/comE1 Glaesserella parasuis strain SC1401

49.057

89.831

0.441
  comEA Vibrio cholerae C6706

41.441

94.068

0.39
  comEA Vibrio cholerae strain A1552

41.441

94.068

0.39