Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   N8E87_RS00925 Genome accession   NZ_CP104917
Coordinates   189702..190217 (+) Length   171 a.a.
NCBI ID   WP_017805689.1    Uniprot ID   A0A0F5F0Y4
Organism   Avibacterium paragallinarum strain AP-2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 184702..195217
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N8E87_RS00915 (N8E87_00915) - 185504..186550 (-) 1047 WP_017805687.1 rod shape-determining protein -
  N8E87_RS00920 (N8E87_00920) uvrA 186696..189524 (-) 2829 WP_264245362.1 excinuclease ABC subunit UvrA -
  N8E87_RS00925 (N8E87_00925) ssb 189702..190217 (+) 516 WP_017805689.1 single-stranded DNA-binding protein Machinery gene
  N8E87_RS12400 (N8E87_00930) - 190380..190775 (-) 396 WP_264245363.1 alpha/beta hydrolase -
  N8E87_RS12405 (N8E87_00935) - 190732..191367 (-) 636 Protein_181 alpha/beta hydrolase -
  N8E87_RS00940 (N8E87_00940) - 191894..192121 (-) 228 WP_039168118.1 hypothetical protein -
  N8E87_RS00945 (N8E87_00945) - 192106..193833 (-) 1728 WP_264245368.1 hypothetical protein -
  N8E87_RS00950 (N8E87_00950) - 194153..194806 (-) 654 WP_264244427.1 IS1595 family transposase -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19127.00 Da        Isoelectric Point: 5.0012

>NTDB_id=733491 N8E87_RS00925 WP_017805689.1 189702..190217(+) (ssb) [Avibacterium paragallinarum strain AP-2]
MAGVNKVIIVGNLGNDPEIRTMPNGEAVANISVATSESWMDKNTGERREITEWHRIVFYRRQAEVAGEYLRKGSKVYVEG
RLRTRKWQDQNGQDRYTTEIQGDVLQMLDSRADRGQGGYSAQGGYAQQGSNQYAQPAQPSYQAPQQQAAARPSSPPTPMV
DDNFDDDNIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=733491 N8E87_RS00925 WP_017805689.1 189702..190217(+) (ssb) [Avibacterium paragallinarum strain AP-2]
ATGGCTGGAGTAAATAAAGTTATTATTGTTGGAAATCTAGGAAATGATCCGGAAATTCGTACAATGCCAAATGGGGAAGC
CGTTGCGAATATTAGTGTTGCGACCAGTGAAAGCTGGATGGATAAAAATACGGGAGAACGCCGTGAGATTACCGAATGGC
ATCGTATTGTGTTTTATCGTCGCCAAGCAGAAGTCGCTGGCGAATATTTACGCAAAGGCTCAAAAGTTTATGTTGAAGGG
CGTTTAAGAACTCGCAAATGGCAAGATCAAAATGGCCAAGATCGTTATACAACAGAAATTCAAGGCGATGTTTTGCAAAT
GTTAGATAGCCGTGCAGATAGAGGACAAGGTGGGTATTCAGCTCAAGGGGGATATGCTCAACAAGGCAGCAACCAATATG
CACAACCCGCACAACCGAGCTATCAAGCCCCTCAACAACAGGCTGCAGCCCGCCCTTCATCACCACCTACTCCTATGGTT
GATGATAATTTCGATGACGATAATATCCCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0F5F0Y4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

68.132

100

0.725
  ssb Vibrio cholerae strain A1552

60.221

100

0.637
  ssb Neisseria meningitidis MC58

48

100

0.491
  ssb Neisseria gonorrhoeae MS11

48

100

0.491