Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   N8E86_RS02625 Genome accession   NZ_CP104914
Coordinates   529121..529642 (-) Length   173 a.a.
NCBI ID   WP_264256500.1    Uniprot ID   -
Organism   Avibacterium paragallinarum strain AG21-0333     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 524121..534642
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N8E86_RS02610 (N8E86_02610) - 527448..527753 (-) 306 WP_017806953.1 DUF5374 domain-containing protein -
  N8E86_RS02615 (N8E86_02615) - 527734..528399 (-) 666 WP_264256498.1 DUF2572 family protein -
  N8E86_RS02620 (N8E86_02620) - 528401..529120 (-) 720 WP_264256499.1 hypothetical protein -
  N8E86_RS02625 (N8E86_02625) comN 529121..529642 (-) 522 WP_264256500.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  N8E86_RS02645 (N8E86_02645) pal 530282..530734 (-) 453 WP_264256501.1 peptidoglycan-associated lipoprotein Pal -
  N8E86_RS02650 (N8E86_02650) tolB 530745..532034 (-) 1290 WP_264256502.1 Tol-Pal system beta propeller repeat protein TolB -
  N8E86_RS02655 (N8E86_02655) tolA 532086..533288 (-) 1203 WP_264256503.1 cell envelope integrity protein TolA -
  N8E86_RS02660 (N8E86_02660) tolR 533305..533727 (-) 423 WP_046098639.1 colicin uptake protein TolR -
  N8E86_RS02665 (N8E86_02665) tolQ 533779..534462 (-) 684 WP_046098640.1 protein TolQ -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 20000.35 Da        Isoelectric Point: 8.4767

>NTDB_id=733468 N8E86_RS02625 WP_264256500.1 529121..529642(-) (comN) [Avibacterium paragallinarum strain AG21-0333]
MNVKGFTLLESLISLLILSILLLMALPIWQQNHNEAVLEKEQHRLYLFLRYIQSRVENSNDIWFLVANRDLLNKKWCISA
QIKQDKICNCLQPQYCSNELMANIYTPTFPQETMIISKNYYPKEIARLSGIRNTVQSDCFLLQAGDKRTLFSFFNVGSLK
LKDISSLSACGDK

Nucleotide


Download         Length: 522 bp        

>NTDB_id=733468 N8E86_RS02625 WP_264256500.1 529121..529642(-) (comN) [Avibacterium paragallinarum strain AG21-0333]
ATGAATGTAAAAGGTTTTACATTGCTTGAATCATTGATTTCATTATTAATTTTAAGCATATTACTATTAATGGCATTGCC
AATTTGGCAACAAAATCATAATGAAGCGGTGCTTGAAAAAGAGCAGCATAGGCTTTATCTTTTTTTACGTTATATTCAAA
GTAGAGTCGAAAACTCTAATGACATATGGTTTTTAGTCGCAAATCGTGATCTCCTTAATAAGAAATGGTGTATTTCTGCT
CAAATAAAACAAGATAAAATCTGTAATTGTTTACAGCCCCAATATTGTTCCAATGAATTAATGGCTAATATTTATACGCC
GACGTTCCCGCAAGAAACAATGATTATAAGTAAAAACTATTATCCTAAAGAAATAGCAAGACTGAGTGGTATTCGGAATA
CCGTGCAATCAGATTGTTTCCTTTTGCAAGCAGGAGATAAACGAACGCTTTTTTCATTTTTTAATGTAGGAAGTTTAAAA
TTAAAAGATATCTCTTCTTTGAGTGCTTGTGGAGATAAGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Haemophilus influenzae Rd KW20

52.976

97.11

0.514