Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   N7V09_RS05240 Genome accession   NZ_CP104900
Coordinates   1148446..1149153 (+) Length   235 a.a.
NCBI ID   WP_126511989.1    Uniprot ID   -
Organism   Shewanella seohaensis strain KCTC 23556     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1143446..1154153
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N7V09_RS05230 (N7V09_05230) uvrA 1143709..1146561 (-) 2853 WP_248967107.1 excinuclease ABC subunit UvrA -
  N7V09_RS05235 (N7V09_05235) - 1146971..1148338 (+) 1368 WP_011624151.1 MFS transporter -
  N7V09_RS05240 (N7V09_05240) ssb 1148446..1149153 (+) 708 WP_126511989.1 single-stranded DNA-binding protein Machinery gene
  N7V09_RS05245 (N7V09_05245) - 1149282..1149500 (+) 219 WP_248967106.1 hypothetical protein -
  N7V09_RS21485 - 1149516..1149755 (+) 240 Protein_998 imm11 family protein -
  N7V09_RS05250 (N7V09_05250) - 1150025..1152856 (+) 2832 WP_248967104.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 25600.98 Da        Isoelectric Point: 5.7610

>NTDB_id=733234 N7V09_RS05240 WP_126511989.1 1148446..1149153(+) (ssb) [Shewanella seohaensis strain KCTC 23556]
MASRGVNKVILVGNLGQDPEVRYMPNGNAVANITVATSESWKDQQGQQQERTEWHRVVLFGKLAEITGEYLRKGSQVYLE
GKLQTRKWKDQSGQDRYSTEVVIDQSGSMQMLGGRNQGQSQGQGQGAPMGGMQQNAGYQAAPAQTAPAQNQYAPAQQSYQ
APAQQPQSGYNQQPAQQSYGQQQQSHAQPQQGGYAPKPAAPAYQAPAAPAQRPAPQPQQNFTPDLDDGWDDDIPF

Nucleotide


Download         Length: 708 bp        

>NTDB_id=733234 N7V09_RS05240 WP_126511989.1 1148446..1149153(+) (ssb) [Shewanella seohaensis strain KCTC 23556]
ATGGCCAGTCGTGGTGTTAACAAGGTAATTTTGGTTGGCAATTTGGGACAAGATCCAGAAGTACGTTACATGCCAAACGG
TAACGCAGTCGCTAACATCACAGTAGCGACCAGCGAATCGTGGAAAGACCAACAAGGTCAACAGCAAGAGCGTACTGAAT
GGCACCGTGTGGTTCTGTTTGGCAAGTTGGCTGAAATTACGGGTGAGTACCTGCGTAAAGGTTCACAGGTTTACCTCGAA
GGTAAACTGCAGACGCGTAAGTGGAAAGACCAAAGTGGTCAAGATCGTTACAGCACTGAAGTGGTTATCGACCAAAGCGG
TAGCATGCAAATGTTAGGTGGTCGCAATCAAGGCCAAAGTCAAGGTCAAGGCCAAGGTGCACCTATGGGTGGCATGCAAC
AAAACGCGGGTTACCAAGCGGCACCGGCTCAAACAGCGCCAGCGCAAAACCAATACGCGCCAGCACAGCAAAGTTACCAA
GCACCTGCACAGCAGCCACAATCTGGCTACAATCAGCAGCCTGCTCAGCAAAGCTATGGCCAGCAACAGCAATCCCATGC
TCAGCCACAGCAAGGTGGTTATGCGCCTAAGCCTGCTGCACCAGCATATCAAGCTCCAGCGGCACCTGCACAACGTCCAG
CGCCACAGCCACAACAAAACTTTACCCCAGATTTGGATGATGGTTGGGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

53.165

100

0.536
  ssb Glaesserella parasuis strain SC1401

44.828

98.723

0.443
  ssb Neisseria gonorrhoeae MS11

41.026

99.574

0.409
  ssb Neisseria meningitidis MC58

41.379

98.723

0.409