Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   N7761_RS01880 Genome accession   NZ_CP104882
Coordinates   380564..381043 (-) Length   159 a.a.
NCBI ID   WP_014167545.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain IDHaas10a     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 375564..386043
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N7761_RS01855 (N7761_01855) - 375927..376319 (+) 393 WP_005544975.1 hypothetical protein -
  N7761_RS01860 (N7761_01860) comE 376339..377748 (+) 1410 WP_050846294.1 type IV pilus secretin PilQ Machinery gene
  N7761_RS01865 (N7761_01865) aroK 377962..378489 (+) 528 WP_005555432.1 shikimate kinase AroK -
  N7761_RS01870 (N7761_01870) aroB 378513..379601 (+) 1089 WP_005569125.1 3-dehydroquinate synthase -
  N7761_RS01875 (N7761_01875) - 379604..380458 (+) 855 WP_005544984.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -
  N7761_RS01880 (N7761_01880) ssb 380564..381043 (-) 480 WP_014167545.1 single-stranded DNA-binding protein Machinery gene
  N7761_RS01885 (N7761_01885) uvrA 381213..384044 (+) 2832 WP_005543937.1 excinuclease ABC subunit UvrA -
  N7761_RS01890 (N7761_01890) - 384149..384488 (+) 340 Protein_369 transposase -
  N7761_RS01895 (N7761_01895) - 384485..385291 (+) 807 WP_162199730.1 IS3 family transposase -
  N7761_RS01900 (N7761_01900) - 385368..385778 (-) 411 WP_005589530.1 MerR family transcriptional regulator -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 17817.63 Da        Isoelectric Point: 5.9482

>NTDB_id=733184 N7761_RS01880 WP_014167545.1 380564..381043(-) (ssb) [Aggregatibacter actinomycetemcomitans strain IDHaas10a]
MAGVNKVIIVGNLGNDPEVRTMPNGEAVANITVATSESWNDKNTGERREVTEWHRIVFYRRQAEVAGEYLRKGSKVYVEG
RLRTRKWQDQNGQDRYTTEIQGDVLQMLDSRAARQSGGNYTPTSQPSYPNQQQSAPRSAPASKPAAEAPMDNFDDDIPF

Nucleotide


Download         Length: 480 bp        

>NTDB_id=733184 N7761_RS01880 WP_014167545.1 380564..381043(-) (ssb) [Aggregatibacter actinomycetemcomitans strain IDHaas10a]
ATGGCTGGAGTAAATAAAGTGATTATTGTCGGTAATTTAGGTAACGATCCTGAAGTCCGCACCATGCCGAACGGCGAAGC
CGTCGCCAATATCACCGTTGCCACCAGTGAAAGCTGGAATGACAAAAACACCGGTGAACGCCGCGAAGTCACCGAATGGC
ACCGCATCGTATTTTATCGCCGCCAGGCGGAAGTGGCGGGGGAATACCTGCGTAAAGGGTCTAAAGTCTATGTCGAAGGA
CGCTTAAGAACCCGTAAATGGCAGGATCAAAACGGTCAAGATCGCTACACCACCGAAATCCAGGGCGACGTTTTACAAAT
GTTAGACAGCCGCGCCGCTCGCCAATCCGGCGGAAACTACACACCGACATCCCAACCAAGTTATCCAAACCAACAACAAA
GCGCCCCACGCAGTGCGCCGGCAAGTAAACCTGCCGCCGAAGCGCCGATGGATAATTTTGATGATGATATTCCTTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

70

100

0.792
  ssb Vibrio cholerae strain A1552

57.471

100

0.629
  ssb Neisseria meningitidis MC58

47.159

100

0.522
  ssb Neisseria gonorrhoeae MS11

47.159

100

0.522