Detailed information    

insolico Bioinformatically predicted

Overview

Name   degS   Type   Regulator
Locus tag   N8A75_RS19090 Genome accession   NZ_CP104878
Coordinates   3525241..3526398 (-) Length   385 a.a.
NCBI ID   WP_003227983.1    Uniprot ID   A0A199WDV9
Organism   Bacillus subtilis strain 4ZT     
Function   phosphorylation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3520241..3531398
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N8A75_RS19060 (N8A75_19060) yvyF 3520494..3520913 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  N8A75_RS19065 (N8A75_19065) comFC 3520987..3521709 (-) 723 WP_003227991.1 comF operon protein ComFC Machinery gene
  N8A75_RS19070 (N8A75_19070) comFB 3521673..3521969 (-) 297 WP_003227989.1 late competence protein ComFB -
  N8A75_RS19075 (N8A75_19075) comFA 3522029..3523420 (-) 1392 WP_003243962.1 ATP-dependent helicase ComFA Machinery gene
  N8A75_RS19080 (N8A75_19080) fakBA 3523526..3524371 (-) 846 WP_003244125.1 DegV family protein -
  N8A75_RS19085 (N8A75_19085) degU 3524469..3525158 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  N8A75_RS19090 (N8A75_19090) degS 3525241..3526398 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  N8A75_RS19095 (N8A75_19095) yvyE 3526615..3527268 (+) 654 WP_003227979.1 YigZ family protein -
  N8A75_RS19100 (N8A75_19100) tagV 3527268..3528443 (+) 1176 WP_003244117.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  N8A75_RS19105 (N8A75_19105) tagO 3528516..3529592 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -
  N8A75_RS19110 (N8A75_19110) tuaH 3529737..3530930 (-) 1194 WP_003243252.1 teichuronic acid biosynthesis protein TuaH -

Sequence

Protein


Download         Length: 385 a.a.        Molecular weight: 44957.76 Da        Isoelectric Point: 6.2957

>NTDB_id=733152 N8A75_RS19090 WP_003227983.1 3525241..3526398(-) (degS) [Bacillus subtilis strain 4ZT]
MNKTKMDSKVLDSILMKMLKTVDGSKDEVFQIGEQSRQQYEQLVEELKQIKQQVYEVIELGDKLEVQTRHARNRLSEVSR
NFHRFSEEEIRNAYEKAHKLQVELTMIQQREKQLRERRDDLERRLLGLQEIIERSESLVSQITVVLNYLNQDLREVGLLL
ADAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGAEDGFQEIKNLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLYTTEEYNGKVKIHFQCIGETEDQRLAPQFEVALFRLAQEAVSNALKHSESEEITVKVEI
TKDFVILMIKDNGKGFDLKEAKEKKNKSFGLLGMKERVDLLEGTMTIDSKIGLGTFIMIKVPLSL

Nucleotide


Download         Length: 1158 bp        

>NTDB_id=733152 N8A75_RS19090 WP_003227983.1 3525241..3526398(-) (degS) [Bacillus subtilis strain 4ZT]
ATGAATAAAACAAAGATGGATTCCAAAGTGCTGGATTCTATTTTGATGAAGATGCTGAAAACCGTTGACGGGAGCAAGGA
CGAGGTTTTTCAAATCGGGGAGCAGTCACGCCAGCAGTATGAACAGCTGGTCGAAGAACTGAAACAAATTAAACAGCAGG
TGTATGAAGTGATTGAGCTTGGCGATAAACTTGAAGTGCAAACTCGCCATGCGAGAAACCGTTTATCCGAGGTCAGCCGT
AATTTTCATAGATTCAGTGAAGAGGAAATCCGCAATGCTTATGAAAAAGCCCATAAGCTGCAGGTAGAATTGACGATGAT
CCAGCAGCGTGAGAAGCAATTGCGCGAACGGCGGGACGATTTGGAGCGCAGATTGCTAGGGCTTCAGGAAATCATTGAGC
GGTCAGAATCATTAGTAAGCCAAATTACAGTTGTGCTCAACTACTTGAATCAGGATTTGCGCGAAGTTGGACTGCTTCTT
GCTGATGCTCAGGCAAAACAGGATTTCGGCTTAAGAATTATTGAGGCGCAGGAAGAAGAGCGAAAAAGAGTCTCAAGAGA
AATCCATGACGGACCCGCTCAAATGCTGGCGAATGTTATGATGAGATCGGAATTAATCGAGCGGATTTTCCGTGACCGGG
GCGCAGAGGACGGATTCCAAGAAATTAAAAATCTCCGCCAAAATGTTCGGAATGCCCTTTACGAAGTGAGAAGGATTATA
TATGATTTAAGACCGATGGCCCTTGATGACCTAGGCCTGATTCCAACTTTAAGAAAATATCTATATACAACCGAGGAATA
TAACGGGAAGGTCAAAATACATTTTCAGTGCATTGGAGAAACAGAGGATCAGAGGCTAGCGCCTCAGTTTGAGGTTGCGC
TCTTCAGGCTCGCACAGGAAGCTGTGTCTAATGCGCTAAAGCATTCTGAATCTGAAGAAATTACAGTCAAAGTTGAGATC
ACAAAGGATTTTGTGATTTTAATGATAAAAGATAACGGTAAAGGGTTCGACCTGAAGGAAGCGAAAGAGAAGAAAAACAA
ATCATTCGGCTTGCTGGGCATGAAAGAAAGAGTAGATTTATTGGAAGGAACGATGACAATAGATTCGAAAATAGGTCTTG
GGACATTTATTATGATTAAGGTTCCGTTATCTCTTTGA

Domains

Predicted by InterproScan.

Histidine kinase (HisKA_3)

(180-248)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(291-384)

Sensor protein DegS (DegS)

(12-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WDV9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degS Bacillus subtilis subsp. subtilis str. 168

100

100

1